Alternatives and similar repositories for SSNetworks

Users that are interested in SSNetworks are comparing it to the libraries listed below

• guyleonard / get_jgi_genomes
  A quick and easy way to download the genomes/predicted proteins of taxa available in JGI's Genome Portal.
  ☆37Updated 2 weeks ago
• gem-pasteur / macsyfinder
  MacSyFinder - Detection of macromolecular systems in protein datasets using systems modelling and similarity search.
  ☆62Updated 6 months ago
• EddyRivasLab / infernal
  RNA secondary structure/sequence profiles for homology search and alignment
  ☆110Updated 7 months ago
• medema-group / BiG-SCAPE
  Similarity networks of biosynthetic gene clusters
  ☆117Updated last week
• EBI-Metagenomics / genomes-catalogue-pipeline
  MGnify genome analysis pipeline
  ☆106Updated last week
• RyanCook94 / inphared
  Providing up-to-date phage genome databases, metrics and useful input files for a number of bioinformatic pipelines.
  ☆67Updated 2 months ago
• medema-group / bigslice
  A highly scalable, user-interactive tool for the large scale analysis of Biosynthetic Gene Clusters data
  ☆82Updated 7 months ago
• iquasere / UPIMAPI
  UniProt Id Mapping through API
  ☆34Updated 8 months ago
• gbouras13 / phold
  Phage Annotation using Protein Structures
  ☆110Updated this week
• KennthShang / PhaBOX
  Local version of the virus identification and analysis web server (tool set)
  ☆61Updated this week
• urmi-21 / orfipy
  Fast and flexible ORF finder
  ☆71Updated 3 years ago
• Russel88 / CRISPRCasTyper
  CCTyper: Automatic detection and subtyping of CRISPR-Cas operons
  ☆102Updated last year
• SBRG / iModulonMiner
  Workflow to download, process, and explore microbial RNA-seq data from NCBI SRA
  ☆17Updated 7 months ago
• cultivarium / GenomeSPOT
  Predict oxygen, temperature, salinity, and pH preferences of bacteria and archaea from a genome
  ☆54Updated 2 months ago
• steineggerlab / Metabuli
  Metabuli: specific and sensitive metagenomic classification via joint analysis of DNA and amino acid.
  ☆140Updated 3 weeks ago
• nselem / corason
  Bioinformatic Tools for study Evolution of metabolic diversity
  ☆34Updated last year
• soedinglab / spacedust
  Discovery of conserved gene clusters in multiple genomes
  ☆81Updated last month
• gamcil / cblaster
  Find clustered hits from a BLAST search
  ☆117Updated 6 months ago
• art-egorov / lovis4u
  Bioinformatics tool for Locus Visualisation
  ☆106Updated last month
• iquasere / KEGGCharter
  A tool for representing genomic potential and transcriptomic expression into KEGG pathways
  ☆58Updated 10 months ago
• mdmparis / defense-finder
  Systematic search of all known anti-phage systems.
  ☆108Updated last week
• IndexThePlanet / Logan
  Logan Unitigs and Contigs
  ☆136Updated last month
• DessimozLab / fold_tree
  snakemake pipeline for creating trees from sequence sets
  ☆79Updated last month
• KatyBrown / CIAlign
  ☆129Updated 9 months ago
• soedinglab / plass
  sensitive and precise assembly of short sequencing reads
  ☆156Updated 8 months ago
• kblin / ncbi-acc-download
  Download files from NCBI Entrez by accession
  ☆126Updated 9 months ago
• allie-walker / Natural-product-function
  scripts for predicting natural product activity from biosynthetic gene cluster sequences
  ☆23Updated 3 weeks ago
• BackofenLab / CRISPRidentify
  ☆30Updated 5 months ago
• ZiyueYang01 / VirID
  VirID: An integrated platform for the discovery and characterization of RNA Viruses
  ☆21Updated 4 months ago
• glarue / jgi-query
  A simple command-line tool to download data from Joint Genome Institute databases
  ☆52Updated 2 years ago