MiguelMSandin / SSNetworks
A brief, quick and dirty introduction to Sequence Similarity Networks
☆21Updated 2 years ago
Alternatives and similar repositories for SSNetworks:
Users that are interested in SSNetworks are comparing it to the libraries listed below
- A highly scalable, user-interactive tool for the large scale analysis of Biosynthetic Gene Clusters data☆78Updated 3 months ago
- MacSyFinder - Detection of macromolecular systems in protein datasets using systems modelling and similarity search.☆58Updated 3 months ago
- A quick and easy way to download the genomes/predicted proteins of taxa available in JGI's Genome Portal.☆34Updated 6 months ago
- RNA secondary structure/sequence profiles for homology search and alignment☆106Updated 4 months ago
- MGnify genome analysis pipeline☆105Updated this week
- Metabuli: specific and sensitive metagenomic classification via joint analysis of DNA and amino acid.☆130Updated this week
- Phage Annotation using Protein Structures☆100Updated last week
- Providing up-to-date phage genome databases, metrics and useful input files for a number of bioinformatic pipelines.☆67Updated 2 months ago
- scripts for predicting natural product activity from biosynthetic gene cluster sequences☆23Updated 2 years ago
- Bioinformatics tool for Locus Visualisation☆91Updated last week
- Logan Unitigs and Contigs☆123Updated 2 weeks ago
- snakemake pipeline for creating trees from sequence sets☆74Updated last month
- Similarity networks of biosynthetic gene clusters☆101Updated last week
- Download files from NCBI Entrez by accession☆119Updated 6 months ago
- CCTyper: Automatic detection and subtyping of CRISPR-Cas operons☆99Updated last year
- Find clustered hits from a BLAST search☆112Updated 3 months ago
- Fast and flexible ORF finder☆69Updated 3 years ago
- ☆125Updated 6 months ago
- sensitive and precise assembly of short sequencing reads☆152Updated 5 months ago
- UniProt Id Mapping through API☆31Updated 5 months ago
- Systematic search of all known anti-phage systems.☆89Updated last month
- Predict oxygen, temperature, salinity, and pH preferences of bacteria and archaea from a genome☆45Updated 2 months ago
- Multi-class signal peptide prediction and structure decoding model.☆83Updated last month
- MSA(Multiple Sequence Alignment) visualization python package for sequence analysis☆121Updated 3 months ago
- Machine-learning-based general bacterial promoter prediction tool.☆45Updated last year
- Pipeline for metabolic annotation of microbial genomes☆143Updated 8 months ago
- A tool for representing genomic potential and transcriptomic expression into KEGG pathways☆54Updated 7 months ago
- A simple command-line tool to download data from Joint Genome Institute databases☆50Updated 2 years ago
- Web scraper to retrieve protein data catalogued by the CAZy, UniProt, NCBI, GTDB and PDB websites/databases.☆14Updated 2 months ago
- Open-source usearch☆108Updated 8 months ago