pantherdb / pangoLinks
☆13Updated this week
Alternatives and similar repositories for pango
Users that are interested in pango are comparing it to the libraries listed below
Sorting:
- HLA-II ligand predictor.☆45Updated 2 years ago
- MHC Class I and Class II neoantigen binding prediction☆32Updated 4 months ago
- ☆31Updated 4 months ago
- Absolute quantification package based on quantms.io☆16Updated last month
- Functional Embedding of Gene Signatures☆48Updated last year
- ☆38Updated last year
- RNA structure probing and post-transcriptional modifications mapping high-throughput data analysis☆43Updated last week
- Immunoglobulin and T-Cell receptor rearrangement software☆50Updated 2 years ago
- R package for functionally scoring phosphorylation sites☆21Updated 6 years ago
- bioinformatics plotting and tools☆59Updated last year
- TCRconv is a deep learning model for predicting recognition between T cell receptors and epitopes. It uses protBERT embeddings for the TC…☆25Updated 3 years ago
- Connectivity Map analysis in MATLAB☆46Updated 3 years ago
- NetTCR-2.0. Sequence-based prediction of peptide-TCR binding☆35Updated 3 years ago
- Modeling of human 5′ UTRs enables the design of new sequences for target levels of translation and 5′ UTR variant prediction.☆53Updated 6 years ago
- CLUMPS adapted to post-translational modifications.☆10Updated 6 months ago
- Python interface to running command-line and web-based MHC binding predictors☆99Updated last year
- This is the official codebase for methylGPT : a foundation model for the DNA methylome.☆48Updated 3 months ago
- Deep Learning Method to Identify Cancer Associated TCRs☆47Updated 3 years ago
- immuneML is a platform for machine learning analysis of adaptive immune receptor repertoire data.☆73Updated last week
- COSMOS (Causal Oriented Search of Multi-Omic Space) is a method that integrates phosphoproteomics, transcriptomics, and metabolomics data…☆63Updated last month
- flexible CDR based distance metrics☆68Updated last week
- Knowledge-primed neural networks☆38Updated 2 years ago
- Predicting gene expression levels from genomic sequences☆55Updated 5 years ago
- Compute generation probabilities of CDR3 amino acid and nucleotide sequences☆62Updated this week
- Prize-Collecting Steiner Forests for Interactomes☆62Updated last year
- Detailed explanation on how to setup database for NCBI IgBlast executable, and using it in Python☆30Updated 3 years ago
- Identify and quantify MHC eluted peptides from mass spectrometry raw data☆40Updated this week
- ☆19Updated last year
- CDR3 clustering module providing a new method for fast and accurate clustering of large data sets of CDR3 amino acid sequences, and offer…☆54Updated last year
- A shiny-based web tool for interactive analysis of DepMap data☆24Updated 4 years ago