PrincetonUniversity / DP_GP_clusterLinks
☆83Updated last year
Alternatives and similar repositories for DP_GP_cluster
Users that are interested in DP_GP_cluster are comparing it to the libraries listed below
Sorting:
- Zero-inflated dimensionality reduction algorithm for single-cell data☆111Updated 5 years ago
- Deep Feature Interaction Maps (DFIM)☆54Updated 6 years ago
- ☆51Updated 2 years ago
- ☆48Updated 6 years ago
- ☆56Updated 5 years ago
- Deep learning for single-cell transcript counts☆88Updated 10 months ago
- ☆102Updated last year
- Wasserstein Generative Adversarial Network for analysing scRNAseq data☆34Updated 5 years ago
- Reproducing the experiments of the paper "Deep generative modeling for single-cell transcriptomics"☆57Updated 7 years ago
- K-nearest neighbor smoothing for high-throughput single-cell RNA-Seq data☆60Updated 3 years ago
- Concise: Keras extension for regulatory genomics☆35Updated 3 years ago
- ☆29Updated 2 years ago
- A collection of scripts and tools for loading, processing, and handling single cell data.☆76Updated 3 months ago
- A deep learning package for predicting TF binding☆42Updated 5 years ago
- "Representation Learning of Genomic Sequence Motifs with Convolutional Neural Networks" by Peter K. Koo and Sean R. Eddy☆34Updated 6 years ago
- python / numpy / pandas / patsy version of ComBat for removing batch effects.☆105Updated 7 years ago
- Annotation of genomic regions using transcription factor binding sites and epigenetic data☆41Updated 3 years ago
- Data and code related to the paper "ADAGE-Based Integration of Publicly Available Pseudomonas aeruginosa..." Jie Tan, et al · mSystems · …☆61Updated 9 years ago
- Variational autoencoder for single cell RNA-seq datasets☆44Updated 8 years ago
- Flexible Integration of Data with Deep LEarning☆51Updated 2 years ago
- Scripts for building computational models of gene regulation with tensorflow☆27Updated 2 years ago
- The art of using t-SNE for single-cell transcriptomics☆130Updated last year
- mRNN is an implementation of a Gated Recurrent Unit (GRU) network for classification of transcripts as either coding or noncoding.☆21Updated 7 years ago
- This Python package will allow you to replicate the experiments from our research on applying Optimal Transport as a similarity metric in…☆42Updated 2 years ago
- Implementations in both Matlab and R of the SIMLR method. The manuscript of the method is available at: https://www.nature.com/articles/n…☆113Updated 3 months ago
- An object oriented python library for topological data analysis of high-throughput single-cell RNA-seq data☆52Updated 7 years ago
- pysster: Learning Sequence And Structure Motifs In Biological Sequences Using Convolutional Neural Networks☆86Updated 6 years ago
- Wishbone is an algorithm to align cells along developmental trajectories with branches☆42Updated 5 years ago
- Coda: a convolutional denoising algorithm for genome-wide ChIP-seq data☆34Updated 8 years ago
- Notebooks accompanying the paper "Navigating the pitfalls of applying machine learning in genomics"☆46Updated 2 years ago