PrincetonUniversity / DP_GP_cluster
☆77Updated 8 months ago
Related projects ⓘ
Alternatives and complementary repositories for DP_GP_cluster
- ☆50Updated last year
- A simulator for single-cell expression data guided by gene regulatory networks☆55Updated 6 months ago
- Machine learning-based approach for the inference of gene regulatory networks from expression data.☆74Updated 3 years ago
- Zero-inflated dimensionality reduction algorithm for single-cell data☆107Updated 4 years ago
- ☆28Updated last year
- ☆48Updated 5 years ago
- Variational autoencoder for single cell RNA-seq datasets☆43Updated 7 years ago
- scLVM is a modelling framework for single-cell RNA-seq data that can be used to dissect the observed heterogeneity into different sources…☆104Updated last year
- A collection of scripts and tools for loading, processing, and handling single cell data.☆72Updated last year
- Deep Feature Interaction Maps (DFIM)☆52Updated 5 years ago
- Reproducing the experiments of the paper "Deep generative modeling for single-cell transcriptomics"☆56Updated 5 years ago
- Wishbone is an algorithm to align cells along developmental trajectories with branches☆42Updated 4 years ago
- Concise: Keras extension for regulatory genomics☆34Updated last year
- ☆55Updated 4 years ago
- This Python package will allow you to replicate the experiments from our research on applying Optimal Transport as a similarity metric in…☆37Updated last year
- Flexible Integration of Data with Deep LEarning☆50Updated last year
- Annotation of genomic regions using transcription factor binding sites and epigenetic data☆40Updated 2 years ago
- ☆88Updated 3 years ago
- Deep-learning Augmented RNA-seq analysis of Transcript Splicing☆110Updated 9 months ago
- ☆97Updated last year
- ☆63Updated last year
- The art of using t-SNE for single-cell transcriptomics☆121Updated 4 years ago
- K-nearest neighbor smoothing for high-throughput single-cell RNA-Seq data☆50Updated 2 years ago
- Wasserstein Generative Adversarial Network for analysing scRNAseq data☆34Updated 3 years ago
- SCODE : an efficient regulatory network inference algorithm from single-cell RNA-Seq during differentiation☆43Updated 4 years ago
- mygene is an easy-to-use Python wrapper to access MyGene.Info services.☆83Updated 2 years ago
- Implementations in both Matlab and R of the SIMLR method. The manuscript of the method is available at: https://www.nature.com/articles/n…☆109Updated 3 weeks ago
- TF MOtif Discovery from Importance SCOres☆124Updated 9 months ago
- RSS: Regression with Summary Statistics☆50Updated 2 months ago
- Python 2.7 implementation of network-based stratification (NBS) algorithm from Hofree et al (Nature Methods 2013)☆38Updated last month