berenslab / ne-spectrum
Attraction-Repulsion Spectrum in Neighbor Embeddings
☆30Updated 2 years ago
Related projects ⓘ
Alternatives and complementary repositories for ne-spectrum
- This Python package will allow you to replicate the experiments from our research on applying Optimal Transport as a similarity metric in…☆37Updated last year
- PyTorch implementation of the paper "Neural Decomposition: Functional ANOVA with Variational Autoencoders"☆25Updated 4 years ago
- generalized principal component analysis (GLM-PCA) implemented in python☆57Updated 3 years ago
- GrandPrix☆16Updated 5 years ago
- Dynamic inference from single-cell snapshots by optimal transport☆15Updated 8 months ago
- Branching Gaussian process☆28Updated last year
- Archetypal Analysis network (AAnet)☆31Updated 3 weeks ago
- An object oriented python library for topological data analysis of high-throughput single-cell RNA-seq data☆7Updated 7 years ago
- Here we address the global structure preservation by tSNE and UMAP☆47Updated 4 years ago
- Learning disentangled representations of single-cell data for high-quality generation☆15Updated 8 months ago
- Categorical Variational Autoencoders☆23Updated 2 years ago
- PyTorch implementation of BasisVAE: Translation-invariant feature-level clustering with Variational Autoencoders☆40Updated 4 years ago
- Gromov-Wasserstein based optimal transport for aligning single-cell multi-omics data☆66Updated 10 months ago
- ☆20Updated 3 years ago
- Code corresponding to the paper Diffusion Earth Mover's Distance and Distribution Embeddings☆35Updated 2 months ago
- Fast Inference of Networks from Directed Regulations☆21Updated 11 months ago
- ☆14Updated 8 months ago
- A simulator for single-cell expression data guided by gene regulatory networks☆55Updated 6 months ago
- Tools for building and manipulating graphs in Python☆41Updated last year
- Density-preserving data visualization tools den-SNE and densMAP☆110Updated 3 years ago
- Code for Nature Scientific Reports 2020 paper: "Unsupervised generative and graph neural methods for modelling cell differentiation" by I…☆18Updated 4 years ago
- Deep Graph Mapper: Seeing Graphs through the Neural Lens☆54Updated last year
- ☆56Updated last year
- ☆16Updated 3 years ago
- Gaussian process regression package for counts data with negative binomial and zero-inflated negative binomial likelihoods☆21Updated 2 months ago
- Latent spaces for single cells☆22Updated last year
- A library to simulate single-cell data☆2Updated last year
- Creating multi-resolution embeddings and clusters from high dimensional data☆48Updated last month
- ☆16Updated 4 years ago
- Implementation of Fibered Auto-Encoders☆9Updated 3 years ago