berenslab / ne-spectrumLinks
Attraction-Repulsion Spectrum in Neighbor Embeddings
☆31Updated 2 years ago
Alternatives and similar repositories for ne-spectrum
Users that are interested in ne-spectrum are comparing it to the libraries listed below
Sorting:
- generalized principal component analysis (GLM-PCA) implemented in python☆60Updated 4 years ago
- This Python package will allow you to replicate the experiments from our research on applying Optimal Transport as a similarity metric in…☆41Updated 2 years ago
- Tools for building and manipulating graphs in Python☆42Updated this week
- PyTorch implementation of BasisVAE: Translation-invariant feature-level clustering with Variational Autoencoders☆42Updated 5 years ago
- Archetypal Analysis network (AAnet)☆37Updated 6 months ago
- Systematically learn and evaluate manifolds from high-dimensional data☆101Updated 2 years ago
- A Library for Denoising Single-Cell Data with Random Matrix Theory☆37Updated 2 years ago
- Here we address the global structure preservation by tSNE and UMAP☆48Updated 5 years ago
- Code for the paper on t-SNE with variable degree of freedom☆24Updated 5 years ago
- ☆20Updated 4 years ago
- The need to understand cell developmental processes has spawned a plethora of computational methods for discovering hierarchies from scRN…☆148Updated 3 years ago
- ☆16Updated 3 years ago
- Density-preserving data visualization tools den-SNE and densMAP☆114Updated 4 years ago
- Latent spaces for single cells☆21Updated last year
- Multilayer modelling of the human transcriptome and biological mechanisms of complex diseases and traits☆11Updated 4 years ago
- Fast Inference of Networks from Directed Regulations☆22Updated last year
- Categorical Variational Autoencoders☆24Updated 3 years ago
- GrandPrix☆16Updated 6 years ago
- ☆10Updated last year
- Parallel opt-SNE implementation with Python wrapper☆37Updated 3 years ago
- ☆16Updated last year
- Picasso: a methods for embedding points in 2D in a way that respects distances while fitting a user-specified shape.☆70Updated last year
- PyTorch implementation of the paper "Neural Decomposition: Functional ANOVA with Variational Autoencoders"☆25Updated 5 years ago
- Gromov-Wasserstein based optimal transport for aligning single-cell multi-omics data☆75Updated last year
- Splotch is a hierarchical generative probabilistic model for analyzing Spatial Transcriptomics (ST) data☆21Updated 3 months ago
- Creating multi-resolution embeddings and clusters from high dimensional data☆55Updated 11 months ago
- Graph regularized nonnegative matrix factorization (GNMF) in Python☆46Updated 5 years ago
- Alignment of spatial genomics data using deep Gaussian processes☆28Updated 2 years ago
- Python code for genetic marker selection using linear programming☆42Updated last year
- Framework for integrating heterogeneous modalities of data☆17Updated 2 years ago