JoseBlanca / seq_crumbsLinks
Little sequence file utilities meant to work within Unix pipelines
☆37Updated 10 years ago
Alternatives and similar repositories for seq_crumbs
Users that are interested in seq_crumbs are comparing it to the libraries listed below
Sorting:
- Miscellaneous Bioinformatics scripts etc mostly in Python☆45Updated 2 weeks ago
- Maximum likelihood demultiplexing☆50Updated 10 months ago
- Using kallisto for metagenomic analysis☆49Updated 8 years ago
- Calculates the lowest common ancestors of each query sequence in a Blast result☆31Updated 8 years ago
- Adapter trimming and virtual library creation for Illumina Nextera Mate Pair libraries.☆53Updated 7 years ago
- Ultra-efficient taxonomic mapping of NGS data☆51Updated 4 years ago
- full taxonomer cython repository☆22Updated 6 years ago
- 10x Genomics Reads Simulator☆46Updated last year
- High-performance error correction for Illumina resequencing data☆74Updated 9 years ago
- Automatically optimise three of Velvet's assembly parameters.☆48Updated 3 years ago
- Building SuperTranscripts: A linear representation of transcriptome data☆68Updated 4 years ago
- Analysis from kallisto paper☆32Updated 9 years ago
- MetaSV: An accurate and integrative structural-variant caller for next generation sequencing☆59Updated 8 years ago
- Protein Alignment and Detection Interface☆60Updated last year
- Tools for next-generation sequencing analysis☆89Updated 6 years ago
- Adapters for trimming☆30Updated 6 years ago
- ☆63Updated 5 years ago
- Scripts for implementing read until and other examples.☆31Updated 5 years ago
- Experimental pipeline for correcting nanopore reads☆39Updated 8 years ago
- Haplotype, isoform and gene level expression analysis using multi-mapping RNA-seq reads☆68Updated last year
- Flash2 has some improvements from flash_1 including new logic from innie and outie overlaps as well as some initial steps for flash for a…☆50Updated 7 years ago
- A Python library for reading and writing PacBio® data files☆41Updated 2 months ago
- conda recipes for genomic data☆84Updated 4 years ago
- Updated Kraken DB install scripts to cope with new-ish NCBI structure☆48Updated 8 years ago
- Various scripts and recipes for working with nanopore data☆34Updated 9 years ago
- ☆78Updated 11 years ago
- Making Snakemake workflows into full-fledged command line tools since 1999.☆51Updated 7 years ago
- Advanced metagenomic Sequence Analysis in R☆15Updated 7 years ago
- Simultaneous detection of SNPs and Indels using a 16-genotype probabilistic model☆27Updated last year
- A tool to benchmark mappers and different parameters within minutes☆44Updated 6 years ago