pcingola / SnpSiftLinks
☆38Updated 8 months ago
Alternatives and similar repositories for SnpSift
Users that are interested in SnpSift are comparing it to the libraries listed below
Sorting:
- Tools for bam file processing☆55Updated 10 years ago
- Tools for next-generation sequencing analysis☆89Updated 6 years ago
- Maximum likelihood demultiplexing☆47Updated 7 months ago
- Haplotype, isoform and gene level expression analysis using multi-mapping RNA-seq reads☆68Updated last year
- Validate FastQ Files☆36Updated 6 years ago
- MetaSV: An accurate and integrative structural-variant caller for next generation sequencing☆58Updated 8 years ago
- conda recipes for genomic data☆84Updated 4 years ago
- Bioinformatic Analysis pipeLine for SomAtic Mutations In Cancer☆53Updated last week
- Useful tools for working with Salmon output☆38Updated 5 years ago
- Gene Fusion Visualiser☆51Updated 2 years ago
- Please consider using/contributing to https://github.com/nf-core/sarek☆41Updated 4 years ago
- RetroSeq is a bioinformatics tool that searches for mobile element insertions from aligned reads in a BAM file and a library of reference…☆67Updated 2 years ago
- Making Snakemake workflows into full-fledged command line tools since 1999.☆51Updated 7 years ago
- Preprocessing tools for unique molecular index (UMI) sequencing reads☆31Updated 2 years ago
- Toolkit for the design and analysis of amplicon sequencing experiments utilizing unique molecular identifiers (UMIs)☆42Updated last month
- Analysis from kallisto paper☆32Updated 9 years ago
- Calib clusters barcode tagged paired-end reads based on their barcode and sequence similarity.☆39Updated 2 years ago
- Fast fusion detection using kallisto☆79Updated 3 months ago
- simple library for dealing with SAM cigar strings☆41Updated 4 years ago
- Flash2 has some improvements from flash_1 including new logic from innie and outie overlaps as well as some initial steps for flash for a…☆50Updated 7 years ago
- small RNA analysis from NGS data☆37Updated last year
- Mutation Identification Pipeline. Read the latest documentation:☆47Updated last year
- Keep Me Around: Intron Retention Detection☆29Updated 6 years ago
- (WIP) best-practices workflow for rare disease☆62Updated last year
- De novo transcriptome assembler for short reads☆64Updated 7 years ago
- ☆63Updated 4 years ago
- Chanjo provides a better way to analyze coverage data in clinical sequencing.☆51Updated 10 months ago
- Prepare Sailfish and Salmon output for downstream analysis☆42Updated 6 years ago
- Full-spectrum copy number variation detection by high-throughput DNA sequencing☆40Updated 4 years ago
- Remove primer sequence from BAM alignments by soft-clipping☆31Updated 5 years ago