A Nextflow implementation of the Tuxedo Suite of Tools: HISAT, StringTie & Ballgown
☆10Apr 2, 2018Updated 7 years ago
Alternatives and similar repositories for tuxedo-nf
Users that are interested in tuxedo-nf are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- List of companies☆13Dec 24, 2024Updated last year
- This repository contains all CWL descriptions of the MGnify pipeline version 5.0.☆24Oct 3, 2025Updated 5 months ago
- ScaleBio Single-cell RNA Nextflow Workflow☆40Jul 2, 2025Updated 8 months ago
- ☆10Aug 29, 2018Updated 7 years ago
- This repository has been archived, currently maintained version is at https://github.com/iii-companion/companion☆21Mar 22, 2021Updated 5 years ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- A nextflow implementation of Kallisto & Sleuth RNA-Seq Tools☆23Jun 3, 2018Updated 7 years ago
- Next generation sequencing (NGS/HTS) tools.☆19Jan 25, 2024Updated 2 years ago
- Computational Suite for Bioinformaticians and Biologists (CSBB) is a RShiny application developed with an intention to empower researcher…☆36Apr 5, 2023Updated 2 years ago
- Nextflow pipeline wrapper for executing Cell Ranger☆13Mar 8, 2022Updated 4 years ago
- example ruffus pipeline☆18Sep 30, 2011Updated 14 years ago
- Rank-based Gene Ontology analysis of gene expression data☆43Dec 9, 2022Updated 3 years ago
- EPIDEMIC is an easy-to-run Matlab/Octave educational toolkit for epidemiological analysis.☆17Apr 4, 2025Updated 11 months ago
- micro-read Fast Alignment Search Tool☆19Jul 19, 2019Updated 6 years ago
- Feature extraction algorithm for genomic data☆15Sep 28, 2021Updated 4 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click and start building anything your business needs.
- official repository for the UEA sRNA Workbench☆10May 31, 2023Updated 2 years ago
- Gene network analysis☆19Dec 2, 2022Updated 3 years ago
- Seven Bridges Python library for programatic generation of CWL workflows.☆21Oct 26, 2022Updated 3 years ago
- This is a repository for development of the SARS-CoV-2 Bioinformatics for Beginners Course☆11Jul 5, 2024Updated last year
- Resources for bioinformatics jobs☆54Jul 10, 2025Updated 8 months ago
- A BioWDL pipeline for processing RNA-seq data, starting with FASTQ files to produce expression measures and VCFs. Category:Multi-Sample☆33Mar 10, 2023Updated 3 years ago
- An efficient way to guess the library type of your RNA-Seq data.☆33Oct 11, 2022Updated 3 years ago
- Data portal for exploring and accessing data☆16Oct 30, 2023Updated 2 years ago
- Please consider using/contributing to https://github.com/nf-core/sarek☆18Jan 3, 2019Updated 7 years ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- Course materials for An Introduction to Machine Learning 2019☆16Oct 1, 2019Updated 6 years ago
- Bioconductor package "ballgown", devel version. Isoform-level differential expression analysis in R.☆148Aug 30, 2021Updated 4 years ago
- Generation of CWL programmatically. Available types: CommandLineTool and DockerRequirement☆29Jun 9, 2020Updated 5 years ago
- DEPRECIATED! Please use nf-core/tools instead☆19Aug 8, 2018Updated 7 years ago
- An automated ChIP-seq pipeline using Nextfow☆18Oct 6, 2022Updated 3 years ago
- The set of NGS processing pipelines used at Babraham☆17Feb 11, 2026Updated last month
- Analysis from kallisto paper☆32Feb 10, 2016Updated 10 years ago
- Patient-Specific Modeling in Python☆19Mar 16, 2026Updated 2 weeks ago
- Workflows I find helpful for fungal genome annotation☆21Jun 30, 2023Updated 2 years ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- Short course describing the considerations for a successful RNA-seq experiment☆19Mar 20, 2026Updated last week
- ☆18Nov 21, 2024Updated last year
- A web application framework for analysis and visualization of High throughput Sequencing metagenomic data☆10Nov 21, 2016Updated 9 years ago
- INNUENDO quality control of reads, de novo assembly and contigs quality assessment, and possible contamination search☆15Dec 14, 2022Updated 3 years ago
- Nextflow workshop 2018 -- Training pages -> https://nextflow-io.github.io/nf-hack18/☆19Mar 24, 2019Updated 7 years ago
- Query language for filtering SAM/BAM reads☆31Oct 15, 2024Updated last year
- A python script used to annotate genomic intervals.☆18May 29, 2020Updated 5 years ago