evanfloden / tuxedo-nfLinks
A Nextflow implementation of the Tuxedo Suite of Tools: HISAT, StringTie & Ballgown
☆10Updated 7 years ago
Alternatives and similar repositories for tuxedo-nf
Users that are interested in tuxedo-nf are comparing it to the libraries listed below
Sorting:
- See the main fork of this repository here >>>☆38Updated 4 months ago
- DEPRECIATED! Please use nf-core/tools instead☆19Updated 7 years ago
- A nextflow implementation of Kallisto & Sleuth RNA-Seq Tools☆23Updated 7 years ago
- YAMP: Yet Another Metagenomic Pipeline☆60Updated 2 years ago
- Genotype Imputation Pipeline for H3Africa☆22Updated 10 months ago
- An automated ChIP-seq pipeline using Nextfow☆18Updated 2 years ago
- Nextflow basic tutorial for newbie users☆33Updated 7 years ago
- Detect germline or somatic variants from normal or tumour/normal whole-genome or targeted sequencing☆133Updated 5 years ago
- A Nextflow-based pipeline for comprehensive analyses of long non-coding RNAs from RNA-seq datasets☆83Updated 2 years ago
- Please consider using/contributing to https://github.com/nf-core/sarek☆17Updated 6 years ago
- Platypus Variant Caller☆108Updated last year
- Deep Variant as a Nextflow pipeline☆30Updated 5 years ago
- De novo assembly of nanopore reads using nextflow☆20Updated 5 years ago
- A 3'-end adapter contaminant trimmer☆95Updated 7 years ago
- An NGS read trimming tool that is specific, sensitive, and speedy. (production)☆122Updated 4 months ago
- VerifyBamID2: A robust tool for DNA contamination estimation from sequence reads using ancestry-agnostic method.☆99Updated last year
- MetaSV: An accurate and integrative structural-variant caller for next generation sequencing☆58Updated 8 years ago
- Workflows used for WGS data processing -- replaced by https://github.com/gatk-workflows/gatk4-genome-processing-pipeline☆57Updated 5 years ago
- Nextflow RNA-Seq Best Practice analysis pipeline, used at the SciLifeLab National Genomics Infrastructure.☆51Updated 7 years ago
- ☆82Updated 3 years ago
- A proof of concept RNA-Seq pipeline with Nextflow☆33Updated 4 years ago
- A flexible Nextflow-based framework for the definition of sequencing data processing pipelines☆44Updated 5 years ago
- De novo transcriptome assembler for short reads☆63Updated 7 years ago
- Visualization and annotation of CNVs from population-scale whole-genome sequencing data☆72Updated 7 years ago
- flexible barcode and adapter removal☆79Updated 2 years ago
- Assembly Based ReAligner☆74Updated 7 years ago
- A novel pipeline framework to accelerate bioinformatics analysis☆30Updated this week
- Tools for next-generation sequencing analysis☆89Updated 6 years ago
- UCSC Nanopore group's software pipeline for reference-based sequence analysis☆55Updated 9 years ago
- Workflows for converting between sequence data formats☆39Updated 4 years ago