STAIG: Spatial Transcriptomics Analysis via Image-Aided Graph Contrastive Learning for Deciphering and Alignment-Free Integration
☆21Mar 31, 2025Updated last year
Alternatives and similar repositories for STAIG
Users that are interested in STAIG are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆47May 31, 2024Updated 2 years ago
- ☆15Jul 26, 2023Updated 2 years ago
- This is the PyTorch implementation of the paper ''STINR: Deciphering Spatial Transcriptomics via Implicit Neural Representation'' (CVPR 2…☆20Mar 26, 2025Updated last year
- ☆13Sep 30, 2024Updated last year
- ☆22Feb 5, 2025Updated last year
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- Leveraging Digital Pathology Foundation Models to characterize the tumor microenvironment (TME)☆35Nov 24, 2025Updated 7 months ago
- A Spatial Transcriptomics Geospatial Profile Recovery System Tool through Anchors☆19Jul 24, 2025Updated 11 months ago
- spatialDLPFC project involving Visium (n = 30), Visium SPG (n = 4) and snRNA-seq (n = 19) samples☆31Mar 26, 2026Updated 3 months ago
- Scripts used to generate the data/figures contained in "Single Cell Transcriptomics Reveals Cell Type Specific Diversification in Human H…☆15Mar 10, 2023Updated 3 years ago
- Bayesian Analytics for Spatial Segmentation☆33May 4, 2025Updated last year
- [Advanced Science 2025] SpaBatch: Deep learning-based cross-slice integration and 3D spatial domain identification in spatial transcripto…☆21Jun 8, 2026Updated last month
- Transposable element expression at unique loci in single cells with CELLO-seq☆12Jun 17, 2024Updated 2 years ago
- [ICML 2025] Code for SUICA: Learning Super-high Dimensional Sparse Implicit Neural Representations for Spatial Transcriptomics.☆21Nov 22, 2025Updated 7 months ago
- ☆42Dec 4, 2023Updated 2 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Cross-platform data for sequencing-based spatial transcriptomics benchmarking☆13Oct 26, 2023Updated 2 years ago
- ☆70Nov 6, 2024Updated last year
- ☆12Mar 22, 2023Updated 3 years ago
- Bayesian model for clustering and enhancing the resolution of spatial gene expression experiments.☆181Jan 8, 2026Updated 6 months ago
- ☆13Mar 29, 2024Updated 2 years ago
- Implementation of multiplex Leiden for analysis of spatial omics data☆22Jul 7, 2026Updated 2 weeks ago
- Code for the spatialLIBD R/Bioconductor package and shiny app☆112May 20, 2026Updated 2 months ago
- Suite of analysis tools for spatial total RNA-sequencing☆12Aug 10, 2023Updated 2 years ago
- Identify spatial domain☆92May 29, 2025Updated last year
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- Awesome generative spatial omics tools☆29Updated this week
- A visual–omics foundation model to bridge histopathology with spatial transcriptomics☆146Jun 3, 2025Updated last year
- ☆23Dec 8, 2023Updated 2 years ago
- Trends in single cell papers☆17Sep 23, 2024Updated last year
- ☆162Mar 19, 2024Updated 2 years ago
- R integration for edlib, a C/C++ library for pairwise sequence alignment using edit distance (Levenshtein distance).☆11Jul 20, 2025Updated last year
- ☆10Apr 22, 2024Updated 2 years ago
- ☆20Jan 6, 2024Updated 2 years ago
- Reworked clustering metrics for assessing performance in imbalanced settings☆18Jun 3, 2024Updated 2 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Data processing and analysis scripts for our spatial profiling of embryos using seqFISH☆16Feb 10, 2023Updated 3 years ago
- ☆19May 13, 2026Updated 2 months ago
- ☆29Jan 4, 2024Updated 2 years ago
- ☆23Mar 22, 2023Updated 3 years ago
- Scalable Generation of Spatial Transcriptomics from Histology Images via Whole-Slide Flow Matching, ICML2025 (Spotlight)☆36Aug 11, 2025Updated 11 months ago
- Analyse RNA feature distributions.☆20Dec 16, 2024Updated last year
- Codes used in LISTA project.☆15Apr 17, 2024Updated 2 years ago