Alternatives and similar repositories for cem-dataset

Users that are interested in cem-dataset are comparing it to the libraries listed below

• funkey / waterz
  Simple watershed and agglomeration library for affinity graphs.
  ☆25Updated 8 months ago
• funkelab / lsd
  🌈
  ☆59Updated 3 months ago
• janelia-cellmap / cellmap-segmentation-challenge
  Repository of scripts to facilitate participation in CellMap's segmentation challenge. This includes downloading data, simple setups for …
  ☆33Updated this week
• constantinpape / elf
  Utils and convenience functions for large-scale bio-image analysis.
  ☆57Updated last week
• constantinpape / torch-em
  Deep-learning based semantic and instance segmentation for 3D Electron Microscopy and other bioimage analysis problems based on pytorch.
  ☆98Updated last week
• vanvalenlab / cellSAM
  Codebase for "A Foundation Model for Cell Segmentation"
  ☆98Updated 2 weeks ago
• zudi-lin / pytorch_connectomics
  PyTorch Connectomics: segmentation toolbox for EM connectomics
  ☆179Updated last month
• BiaPyX / BiaPy
  Open source Python library for building bioimage analysis pipelines
  ☆178Updated this week
• sartorius-research / LIVECell
  ☆194Updated 2 years ago
• seung-lab / DeepEM
  Deep Learning for EM Connectomics
  ☆15Updated 2 years ago
• volume-em / empanada
  Panoptic segmentation algorithms for 2D and 3D electron microscopy images
  ☆2Updated 2 years ago
• volume-em / empanada-napari
  Panoptic segmentation algorithms for 2D and 3D electron microscopy in napari
  ☆23Updated 2 months ago
• ilastik / nature_methods_multicut_pipeline
  ☆21Updated 4 years ago
• yanglf1121 / NuSeT
  NuSeT: A Deep Learning Tool for Reliably Separating and Analyzing Crowded Cells
  ☆20Updated 4 years ago
• juglab / EmbedSeg
  Code Implementation for EmbedSeg, an Instance Segmentation Method for Microscopy Images
  ☆116Updated last year
• GuillaumeMougeot / biom3d
  Easy Volumetric Segmentation with Deep Learning
  ☆26Updated last week
• AntonotnaWang / 3DCellSeg
  Official implementation of "A novel deep learning-based 3D cell segmentation framework for future image-based disease detection". (Howeve…
  ☆22Updated 2 years ago
• kreshuklab / MorphoFeatures
  MorphoFeatures code and data
  ☆21Updated 2 years ago
• funalab / QCANet
  Convolutional Neural Network-Based Instance Segmentation Algorithm to Acquire Quantitative Criteria of Early Mouse Development
  ☆31Updated 2 years ago
• CAREamics / careamics
  A deep-learning library for denoising images using Noise2Void and friends (CARE, PN2V, HDN etc.), with a focus on user-experience and doc…
  ☆94Updated this week
• weigertlab / trackastra
  Transformer-based cell tracking for live-cell microscopy
  ☆77Updated this week
• KristinaUlicna / DeepTree
  Jupyter notebooks for deep lineage analysis of single-cell heterogeneity and cell cycling duration heritability.
  ☆30Updated 4 years ago
• janelia-cellmap / fibsem-tools
  Tools for handling FIB-SEM data and annotations
  ☆22Updated 3 months ago
• unidesigner / groundtruth-drosophila-vnc
  Segmented anisotropic ssTEM dataset of neural tissue
  ☆24Updated 11 years ago
• cremi / cremi_python
  Python scripts to read and write the CREMI hdf5 file format.
  ☆38Updated 2 years ago
• JackieZhai / awesome-vem-datasets
  Open source volume electron microscopy (vEM) datasets for connectomics.
  ☆14Updated 8 months ago
• CellArchLab / MemBrain-v2
  This is the main repository for MemBrain v2. It includes MemBrain-seg, MemBrain-pick, MemBrain-stats, and several Napari tools.
  ☆12Updated 5 months ago
• divelab / deepem3d
  ☆17Updated 7 years ago
• AllenCell / aics-ml-segmentation
  ☆32Updated 2 years ago
• neurobiology-ut / PHILOW
  Python-based Human-In-the-LOop Workflow: PHILOW is an interactive deep learning-based platform for 3D datasets
  ☆26Updated 5 months ago