hthierno / pytorch-stardistLinks
PyTorch implementation of 2D and 3D StarDist - Object Detection with Star-convex Shapes
☆24Updated 2 years ago
Alternatives and similar repositories for pytorch-stardist
Users that are interested in pytorch-stardist are comparing it to the libraries listed below
Sorting:
- Deep-learning based semantic and instance segmentation for 3D Electron Microscopy and other bioimage analysis problems based on pytorch.☆106Updated last week
- Official implementation of "A novel deep learning-based 3D cell segmentation framework for future image-based disease detection". (Howeve…☆22Updated 2 years ago
- Unsupervised Instance Segmentation in Microscopy☆24Updated last year
- Segment Anything for Medical Imaging☆25Updated 2 weeks ago
- Codebase for "A Foundation Model for Cell Segmentation"☆107Updated this week
- StarDist PyTorch☆47Updated 2 years ago
- Repository of scripts to facilitate participation in CellMap's segmentation challenge. This includes downloading data, simple setups for …☆37Updated last week
- Inference code for HoVer-NeXt☆39Updated 5 months ago
- QuPath extension for Segment Anything Model (SAM)☆117Updated last month
- Encoder-Decoder Cell and Nuclei segmentation models☆92Updated last month
- 3D Extension of the Cellpose Algorithm by Stringer et al., 2021.☆35Updated 2 years ago
- Code Implementation for EmbedSeg, an Instance Segmentation Method for Microscopy Images☆119Updated last year
- 🔥 🚀 Blazingly fast pipeline for patch-based classification in whole slide images☆80Updated last year
- Training/Evaluation code for HoVer-NeXt☆14Updated 8 months ago
- ☆93Updated last month
- Segment Anything for Histopathology☆46Updated last week
- Python package for deep learning based image to image transformation☆53Updated 3 weeks ago
- simple package for augmentation of n-dimensional arrays☆33Updated 2 years ago
- Part 1 of Allen Cell and Structure Segmenter: classic image segmentation workflow☆26Updated last year
- ☆183Updated 2 months ago
- (NeurIPS 2022 CellSeg Challenge - 1st Winner) Open source code for "MEDIAR: Harmony of Data-Centric and Model-Centric for Multi-Modality …☆153Updated last year
- NuCLS: A scalable crowdsourcing, deep learning approach and dataset for nucleus classification, localization and segmentation☆54Updated 3 years ago
- Re-stained whole slide image alignment☆35Updated last year
- ☆145Updated last month
- Analysis of 3D pathology samples using weakly supervised AI - Cell☆105Updated 7 months ago
- ☆90Updated 3 months ago
- The code of SRIBD-Med Team for NeurIPS2022 Cell Segmentation Challenge☆15Updated 2 years ago
- Easy Volumetric Segmentation with Deep Learning☆27Updated this week
- Image-translation-assisted segmentation in 3D☆26Updated 3 years ago
- 🔬🖥 Automated Blood Vasculature Analysis of 3D Light-Sheet Image Volumes☆51Updated last year