hthierno / pytorch-stardistLinks
PyTorch implementation of 2D and 3D StarDist - Object Detection with Star-convex Shapes
☆25Updated 2 years ago
Alternatives and similar repositories for pytorch-stardist
Users that are interested in pytorch-stardist are comparing it to the libraries listed below
Sorting:
- Deep-learning based semantic and instance segmentation for 3D Electron Microscopy and other bioimage analysis problems based on pytorch.☆109Updated last week
- Official implementation of "A novel deep learning-based 3D cell segmentation framework for future image-based disease detection". (Howeve…☆22Updated 2 years ago
- Codebase for "A Foundation Model for Cell Segmentation"☆110Updated 2 weeks ago
- Unsupervised Instance Segmentation in Microscopy☆24Updated last year
- Segment Anything for Medical Imaging☆26Updated last week
- StarDist PyTorch☆47Updated 2 years ago
- QuPath extension for Segment Anything Model (SAM)☆122Updated 3 months ago
- 🔥 🚀 Blazingly fast pipeline for patch-based classification in whole slide images☆82Updated last year
- ☆188Updated last week
- Inference code for HoVer-NeXt☆39Updated this week
- simple package for augmentation of n-dimensional arrays☆33Updated 2 years ago
- Training/Evaluation code for HoVer-NeXt☆13Updated 9 months ago
- ☆100Updated 3 weeks ago
- Encoder-Decoder Cell and Nuclei segmentation models☆95Updated last week
- ☆154Updated 3 months ago
- Segment Anything for Histopathology☆50Updated 3 weeks ago
- Analysis of 3D pathology samples using weakly supervised AI - Cell☆107Updated 9 months ago
- Repository of scripts to facilitate participation in CellMap's segmentation challenge. This includes downloading data, simple setups for …☆39Updated last month
- Code Implementation for EmbedSeg, an Instance Segmentation Method for Microscopy Images☆121Updated last year
- NuCLS: A scalable crowdsourcing, deep learning approach and dataset for nucleus classification, localization and segmentation☆55Updated 3 years ago
- Quality control of whole-slide images through multi-class semantic segmentation of artifacts☆38Updated last year
- Python package for deep learning based image to image transformation☆53Updated 2 months ago
- Virtual Alignment of pathoLogy Image Series☆185Updated 4 months ago
- ☆46Updated 3 years ago
- Image-translation-assisted segmentation in 3D☆26Updated 3 years ago
- ☆240Updated last year
- ☆92Updated 4 months ago
- 3D Extension of the Cellpose Algorithm by Stringer et al., 2021.☆35Updated 3 years ago
- CoNIC Challenge☆69Updated last year
- This repository contains the official implementation of the research paper: "Towards Training Large-Scale Pathology Foundation Models: fr…☆34Updated 9 months ago