Alternatives and similar repositories for pytorch-stardist

Users that are interested in pytorch-stardist are comparing it to the libraries listed below

• constantinpape / torch-em
  Deep-learning based semantic and instance segmentation for 3D Electron Microscopy and other bioimage analysis problems based on pytorch.
  ☆110Updated 3 weeks ago
• AntonotnaWang / 3DCellSeg
  Official implementation of "A novel deep learning-based 3D cell segmentation framework for future image-based disease detection". (Howeve…
  ☆22Updated 2 years ago
• ASHISRAVINDRAN / stardist_pytorch
  StarDist PyTorch
  ☆47Updated 3 years ago
• vanvalenlab / cellSAM
  Codebase for "A Foundation Model for Cell Segmentation"
  ☆116Updated 3 weeks ago
• funkelab / cellulus
  Unsupervised Instance Segmentation in Microscopy
  ☆24Updated last year
• computational-cell-analytics / medico-sam
  Segment Anything for Medical Imaging
  ☆27Updated last month
• okunator / cellseg_models.pytorch
  Encoder-Decoder Cell and Nuclei segmentation models
  ☆95Updated 3 weeks ago
• SBU-BMI / wsinfer
  🔥 🚀 Blazingly fast pipeline for patch-based classification in whole slide images
  ☆84Updated last year
• digitalpathologybern / hover_next_inference
  Inference code for HoVer-NeXt
  ☆42Updated last month
• ksugar / qupath-extension-sam
  QuPath extension for Segment Anything Model (SAM)
  ☆125Updated 4 months ago
• PathologyDataScience / NuCLS
  NuCLS: A scalable crowdsourcing, deep learning approach and dataset for nucleus classification, localization and segmentation
  ☆55Updated 3 years ago
• lhaof / CellSeg
  The code of SRIBD-Med Team for NeurIPS2022 Cell Segmentation Challenge
  ☆15Updated 2 years ago
• digitalpathologybern / hover_next_train
  Training/Evaluation code for HoVer-NeXt
  ☆15Updated last month
• kevindehaan / stain-transformation
  ☆46Updated 3 years ago
• TIO-IKIM / CellViT-plus-plus
  ☆164Updated 4 months ago
• GuillaumeMougeot / biom3d
  Easy Volumetric Segmentation with Deep Learning
  ☆28Updated 3 weeks ago
• andreped / fast-stain-normalization
  GPU-accelerated stain normalization command line tool
  ☆24Updated 2 years ago
• stardist / augmend
  simple package for augmentation of n-dimensional arrays
  ☆33Updated 2 years ago
• janelia-cellmap / cellmap-segmentation-challenge
  Repository of scripts to facilitate participation in CellMap's segmentation challenge. This includes downloading data, simple setups for …
  ☆39Updated 2 weeks ago
• instanseg / instanseg
  ☆203Updated last month
• mahmoodlab / TriPath
  Analysis of 3D pathology samples using weakly supervised AI - Cell
  ☆110Updated 10 months ago
• AllenCell / aics-segmentation
  Part 1 of Allen Cell and Structure Segmenter: classic image segmentation workflow
  ☆26Updated last year
• AllenCell / aics-ml-segmentation
  ☆32Updated 4 months ago
• computational-cell-analytics / patho-sam
  Segment Anything for Histopathology
  ☆53Updated 2 months ago
• MMV-Lab / mmv_im2im
  Python package for deep learning based image to image transformation
  ☆53Updated 3 weeks ago
• DIAGNijmegen / pathology-artifact-detection
  Quality control of whole-slide images through multi-class semantic segmentation of artifacts
  ☆38Updated last year
• stegmaierj / Cellpose3D
  3D Extension of the Cellpose Algorithm by Stringer et al., 2021.
  ☆35Updated 3 years ago
• DIAGNijmegen / pathology-hooknet
  ☆66Updated last year
• choosehappy / HoverFast
  Blazing fast nuclei segmentation for brightfield Whole Slide Images
  ☆35Updated 10 months ago
• WeisiX / ITAS3D
  Image-translation-assisted segmentation in 3D
  ☆26Updated 3 years ago