hthierno / pytorch-stardist
PyTorch implementation of 2D and 3D StarDist - Object Detection with Star-convex Shapes
☆21Updated last year
Related projects ⓘ
Alternatives and complementary repositories for pytorch-stardist
- Deep-learning based semantic and instance segmentation for 3D Electron Microscopy and other bioimage analysis problems based on pytorch.☆76Updated this week
- Unsupervised Instance Segmentation in Microscopy☆21Updated 7 months ago
- ☆116Updated this week
- StarDist PyTorch☆41Updated 2 years ago
- Encoder-Decoder Cell and Nuclei segmentation models☆80Updated 4 months ago
- Codebase for "A Foundation Model for Cell Segmentation"☆55Updated 3 months ago
- DeeperHistReg - Source Code☆34Updated 6 months ago
- 🔥 🚀 Blazingly fast pipeline for patch-based classification in whole slide images☆59Updated 4 months ago
- Analysis of 3D pathology samples using weakly supervised AI - Cell☆92Updated 2 months ago
- QuPath extension for Segment Anything Model (SAM)☆92Updated 2 months ago
- ☆53Updated 2 weeks ago
- Python package for deep learning based image to image transformation☆49Updated 5 months ago
- Panoptic segmentation algorithms for 2D and 3D electron microscopy images☆2Updated last year
- Weakly-supervised learning pipeline for histopathology images. Publications: Biomarker prediction in colorectal cancer (CRC)☆65Updated 9 months ago
- Utils and convenience functions for large-scale bio-image analysis.☆48Updated last month
- Image-translation-assisted segmentation in 3D☆25Updated 2 years ago
- simple package for augmentation of n-dimensional arrays☆32Updated last year
- PointNu-Net Project☆17Updated 10 months ago
- Inference code for HoVer-NeXt☆22Updated 2 months ago
- 3D Extension of the Cellpose Algorithm by Stringer et al., 2021.☆31Updated 2 years ago
- HoVer-Net inference code for simultaneous nuclear segmentation and classification☆67Updated 2 years ago
- Solid Tumor Associative Modeling in Pathology☆47Updated 2 months ago
- Morphological Prototyping for Unsupervised Slide Representation Learning in Computational Pathology - CVPR 2024☆95Updated 2 months ago
- Easy Volumetric Segmentation with Deep Learning☆22Updated 3 weeks ago
- Time arrow prediction for live-cell microscopy☆18Updated 5 months ago
- ☆12Updated last year
- GPU-accelerated stain normalization command line tool☆19Updated last year
- Virtual Alignment of pathoLogy Image Series☆123Updated 3 months ago
- Pipeline for computational pathology☆34Updated 10 months ago
- The code of SRIBD-Med Team for NeurIPS2022 Cell Segmentation Challenge☆15Updated last year