hthierno / pytorch-stardistLinks
PyTorch implementation of 2D and 3D StarDist - Object Detection with Star-convex Shapes
☆24Updated 2 years ago
Alternatives and similar repositories for pytorch-stardist
Users that are interested in pytorch-stardist are comparing it to the libraries listed below
Sorting:
- Deep-learning based semantic and instance segmentation for 3D Electron Microscopy and other bioimage analysis problems based on pytorch.☆100Updated this week
- Official implementation of "A novel deep learning-based 3D cell segmentation framework for future image-based disease detection". (Howeve…☆22Updated 2 years ago
- Codebase for "A Foundation Model for Cell Segmentation"☆99Updated 3 weeks ago
- Segment Anything for Medical Imaging☆23Updated last week
- Unsupervised Instance Segmentation in Microscopy☆23Updated last year
- StarDist PyTorch☆47Updated 2 years ago
- QuPath extension for Segment Anything Model (SAM)☆114Updated last week
- ☆137Updated 2 weeks ago
- Repository of scripts to facilitate participation in CellMap's segmentation challenge. This includes downloading data, simple setups for …☆35Updated this week
- simple package for augmentation of n-dimensional arrays☆33Updated last year
- Segment Anything for Histopathology☆37Updated last month
- Python package for deep learning based image to image transformation☆53Updated last month
- Repository for "SAM-Path: A Segment Anything Model for Semantic Segmentation in Digital Pathology" (MedAGI2023, MICCAI2023 workshop)☆42Updated 10 months ago
- 🔥 🚀 Blazingly fast pipeline for patch-based classification in whole slide images☆74Updated last year
- Training/Evaluation code for HoVer-NeXt☆14Updated 7 months ago
- Encoder-Decoder Cell and Nuclei segmentation models☆92Updated last week
- Easy Volumetric Segmentation with Deep Learning☆26Updated 2 weeks ago
- Inference code for HoVer-NeXt☆36Updated 3 months ago
- ☆175Updated last month
- NuCLS: A scalable crowdsourcing, deep learning approach and dataset for nucleus classification, localization and segmentation☆54Updated 3 years ago
- 3D Extension of the Cellpose Algorithm by Stringer et al., 2021.☆35Updated 2 years ago
- Analysis of 3D pathology samples using weakly supervised AI - Cell☆102Updated 6 months ago
- Part 1 of Allen Cell and Structure Segmenter: classic image segmentation workflow☆26Updated last year
- The code of SRIBD-Med Team for NeurIPS2022 Cell Segmentation Challenge☆15Updated 2 years ago
- ☆90Updated last week
- Transformer-based cell tracking for live-cell microscopy☆81Updated last week
- GPU-accelerated stain normalization command line tool☆22Updated last year
- CoNIC Challenge☆66Updated last year
- Utils and convenience functions for large-scale bio-image analysis.☆57Updated this week
- Panoptic segmentation algorithms for 2D and 3D electron microscopy images☆2Updated 2 years ago