Alternatives and similar repositories for muMatch

Users that are interested in muMatch are comparing it to the libraries listed below

• DanuserLab / u-unwrap3D
  Transform 3D cell surfaces into different representations including topographic maps, 3D spheres, and 2D images for doing optimized quant…
  ☆27Updated 6 months ago
• kreshuklab / MorphoFeatures
  MorphoFeatures code and data
  ☆21Updated 2 years ago
• imyiningliu / cellstitch
  ☆10Updated last year
• haesleinhuepf / napari-process-points-and-surfaces
  Process and analyze surfaces using vedo in napari.
  ☆24Updated last year
• gioda / FeARLesS
  4D reconstruction of developmental trajectories using spherical harmonics
  ☆22Updated last month
• morphometrics / morphometrics
  ☆20Updated last year
• CAVEconnectome / MeshParty
  ☆36Updated last month
• Deep-MI / LaPy
  Toolbox for Differential Geometry on Triangle and Tetrahedra Meshes (FEM, Laplace, Poisson, Heat Flow ...)
  ☆86Updated 2 months ago
• DanuserLab / u-segment3D
  Generate consensus 3D cells segmentations by combining 2D cell segmentations from any combination of xy, xz, yz views, compatible with ou…
  ☆17Updated 2 months ago
• seung-lab / fastmorph
  Multilabel and Grey 3D morphological image processing functions. Dilate, Erode, Opening, Closing, Hole Filling.
  ☆15Updated last month
• torressancheza / ias
  Interacting Active Surfaces
  ☆9Updated 2 years ago
• uhlmanngroup / shapeanalysis101
  A tutorial of classical shape analysis methods
  ☆11Updated last year
• smithk / cidre
  A general illumination correction method for optical microscopy.
  ☆41Updated 3 years ago
• antonfrancois / Demeter_metamorphosis
  Open library for LDDMM and Metamorphosis in PyTorch
  ☆23Updated last week
• napari / napari-animation
  A napari plugin for making animations
  ☆84Updated 8 months ago
• NicoKiaru / LimeSeg
  Point based 3D segmentation plugin for FIJI
  ☆9Updated last year
• nadavyayon / Intensify3D
  Intensify3D is an image normalization tool for large scale fluorescent imaging. It corrects heterogeneities in the signal (defined by the…
  ☆19Updated 4 years ago
• seung-lab / zmesh
  Marching Cubes & Mesh Simplification on multi-label 3D images.
  ☆62Updated 2 months ago
• seung-lab / corgie
  Command line tool for registration of very large 3D volumes.
  ☆14Updated last year
• seung-lab / kimimaro
  Skeletonize densely labeled 3D image segmentations with TEASAR. (Medial Axis Transform)
  ☆150Updated this week
• AllenCell / aics-shparam
  ☆20Updated 2 weeks ago
• AllenCellModeling / DLITE
  Let's infer the forces that cells generate during time series by looking at the angles they make with each other.
  ☆9Updated last year
• uhlmanngroup / splinedist
  SplineDist: Automated Cell Segmentation with Spline Curves
  ☆67Updated 7 months ago
• vedranaa / local-thickness
  Fast local thickness in 3D and 2D
  ☆13Updated last year
• RUB-Bioinf / VesselExpress
  🔬🖥 Automated Blood Vasculature Analysis of 3D Light-Sheet Image Volumes
  ☆47Updated 11 months ago
• funkelab / motile
  Multi-Object Tracker using Integer Linear Equations
  ☆30Updated last month
• m-albert / MVRegFus
  Python module for registering and fusing multi-view microscopy data
  ☆23Updated 2 months ago
• DanuserLab / u-shape3D
  Detect morphological motifs, such as blebs, filopodia, and lamellipodia, from 3D images of surfaces, particularly images of cell surfaces…
  ☆29Updated last month
• Sentinal4D / cellshape
  3D shape analysis using deep learning
  ☆24Updated last year
• constantinpape / elf
  Utils and convenience functions for large-scale bio-image analysis.
  ☆54Updated this week