TKassis / OrgaQuantLinks
Organoid Localization and Quantification Using Deep Convolutional Neural Networks
☆26Updated 3 years ago
Alternatives and similar repositories for OrgaQuant
Users that are interested in OrgaQuant are comparing it to the libraries listed below
Sorting:
- Community-contributed and experimental CellProfiler modules.☆68Updated this week
- Self-supervised models for encoding protein localization patterns from microscopy images☆77Updated last week
- Histology Topography Cytometry Analysis Toolbox☆67Updated last year
- This repository contains the codes to run the nuclei segmentation pipeline of the BIOMAG group inspired by Kaggle's Data Science Bowl 201…☆54Updated 4 years ago
- ☆23Updated 2 years ago
- TissUUmaps is a browser-based tool for fast visualization and exploration of millions of data points overlaying a tissue sample. TissUUma…☆59Updated 2 months ago
- TissUUmaps is a browser-based tool for fast visualization and exploration of millions of data points overlaying a tissue sample. TissUUma…☆23Updated 2 years ago
- An Interactive Image Segmentation Filter for Multiplex Microscopy☆31Updated this week
- Morphological profiling using deep learning☆117Updated 9 months ago
- Multiple-choice microscopy pipeline☆136Updated 2 weeks ago
- astir | Automated cell identity from single-cell multiplexed imaging and proteomics 🖥🔬✨☆53Updated last month
- ☆34Updated last year
- Integrated pipeline for multiplexed image analysis☆93Updated 4 months ago
- A pixel classification based multiplexed image segmentation pipeline☆99Updated last year
- ☆18Updated last year
- CellProfiler tutorial pipelines and images☆93Updated last week
- A self-explanatory, hands-on intro to bioimage analysis in python. Slightly outdated but still much liked by learners.☆98Updated 2 years ago
- CODEX data processing code☆12Updated last month
- SIMPLI is a highly configurable pipeline for the analysis of multiplexed imaging data.☆38Updated 2 years ago
- Supporting data files, documentation, and updated tips for the Cell Painting protocol☆21Updated 3 years ago
- An introduction to deepcell and deep learning☆151Updated 9 months ago
- Predicting Cell Health with Morphological Profiles☆37Updated 3 years ago
- Spatial Single-Cell Analysis Toolkit☆94Updated last month
- Subpopulation detection in high-dimensional single-cell data☆69Updated 4 years ago
- AICS Segmentation (One-Way) Mirror☆45Updated 4 years ago
- deep learning pipeline repository for the paper "Geospatial immune variability illuminates differential evolution of lung adenocarcinoma…☆52Updated 5 years ago
- Jupyter notebooks for CellProfiler and friends☆13Updated 7 years ago
- Microscopy Image Cytometry Toolkit☆116Updated 3 years ago
- A toolkit for processing multiplexed tissue images☆62Updated this week
- Methods for Image-Based Cell Profiling☆51Updated last year