TKassis / OrgaQuantLinks
Organoid Localization and Quantification Using Deep Convolutional Neural Networks
☆28Updated 3 years ago
Alternatives and similar repositories for OrgaQuant
Users that are interested in OrgaQuant are comparing it to the libraries listed below
Sorting:
- Community-contributed and experimental CellProfiler modules.☆69Updated this week
- ☆18Updated last year
- AICS Segmentation (One-Way) Mirror☆45Updated 4 years ago
- A self-explanatory, hands-on intro to bioimage analysis in python. Slightly outdated but still much liked by learners.☆98Updated 2 years ago
- ☆24Updated 2 years ago
- Self-supervised models for encoding protein localization patterns from microscopy images☆78Updated 3 months ago
- CellProfiler tutorial pipelines and images☆98Updated 3 weeks ago
- This repository contains the codes to run the nuclei segmentation pipeline of the BIOMAG group inspired by Kaggle's Data Science Bowl 201…☆55Updated 5 years ago
- Morphological profiling using deep learning☆122Updated last year
- Histology Topography Cytometry Analysis Toolbox☆69Updated 2 weeks ago
- AICS ML Segmentation (One-Way) Mirror☆27Updated 4 years ago
- An introduction to deepcell and deep learning☆154Updated last year
- SIMPLI is a highly configurable pipeline for the analysis of multiplexed imaging data.☆39Updated last month
- astir | Automated cell identity from single-cell multiplexed imaging and proteomics 🖥🔬✨☆57Updated 4 months ago
- Integrated pipeline for multiplexed image analysis☆99Updated 7 months ago
- Microscopy Image Cytometry Toolkit☆114Updated 3 years ago
- An Interactive Image Segmentation Filter for Multiplex Microscopy☆31Updated last week
- Multiple-choice microscopy pipeline☆138Updated this week
- A pixel classification based multiplexed image segmentation pipeline☆101Updated last year
- CODEX data processing code☆12Updated 4 months ago
- Three dimensional cross-modal image inference☆160Updated last month
- Cloud-based data annotation tools for biological images☆82Updated last year
- Supporting data files, documentation, and updated tips for the Cell Painting protocol☆22Updated 3 years ago
- open source version of VAMPIRE analysis : visually-aided morpho-phenotyping recognition☆31Updated 3 years ago
- TissUUmaps is a browser-based tool for fast visualization and exploration of millions of data points overlaying a tissue sample. TissUUma…☆65Updated 6 months ago
- Subpopulation detection in high-dimensional single-cell data☆71Updated 5 years ago
- Raw format to OME-TIFF converter☆56Updated 2 months ago
- TissUUmaps is a browser-based tool for fast visualization and exploration of millions of data points overlaying a tissue sample. TissUUma…☆24Updated 2 years ago
- deep learning pipeline repository for the paper "Geospatial immune variability illuminates differential evolution of lung adenocarcinoma…☆52Updated 5 years ago
- Image registration (alignment) software for large microscopy images☆26Updated 2 years ago