jono-m / OrganoIDView external linksLinks
☆28Dec 13, 2023Updated 2 years ago
Alternatives and similar repositories for OrganoID
Users that are interested in OrganoID are comparing it to the libraries listed below
Sorting:
- segmentation of rod-shaped bacteria☆15Mar 25, 2023Updated 2 years ago
- ☆33Jan 28, 2025Updated last year
- Python program to generate NetworkX graphs from segmented images.☆14Apr 14, 2023Updated 2 years ago
- LSTree is a digital organoid and lineage tree extraction workflow for light sheet movies.☆20Aug 10, 2023Updated 2 years ago
- Organoid Localization and Quantification Using Deep Convolutional Neural Networks☆30Jan 22, 2022Updated 4 years ago
- Cell tracker designed for tracking intestinal organoids☆33Feb 5, 2026Updated last week
- ☆11Jul 13, 2025Updated 7 months ago
- 3D Extension of the Cellpose Algorithm by Stringer et al., 2021.☆35Oct 10, 2022Updated 3 years ago
- A list of (detailed, non-stochastic) action potential models, with links to papers, source code, CellML and Myokit implementations☆10Oct 14, 2025Updated 4 months ago
- Few-Shot Object Detection with Transformer☆10Jan 3, 2024Updated 2 years ago
- Non-disruptive collagen characterization in clinical histopathology using cross-modality image synthesis☆10Apr 25, 2025Updated 9 months ago
- Utility to record data from the FinalSpark live☆11Sep 16, 2025Updated 5 months ago
- UNet script, model, sample data☆14Feb 19, 2025Updated 11 months ago
- Incrementally compute an approximate truncated singular value decomposition☆14Dec 15, 2025Updated 2 months ago
- ☆12Apr 4, 2023Updated 2 years ago
- Code and results from TotalSeqC antibody titration and pipeline benchmarking for CITE-seq experiments☆10Mar 13, 2021Updated 4 years ago
- Informationssammlung zu Arsenal, Eskalationsrisiken, Einsatz und Auswirkungen☆12Mar 17, 2022Updated 3 years ago
- a metabologenomic pipeline integrating metabolomic and genomic data to identify novel RiPPs and their BGCs☆12Oct 4, 2021Updated 4 years ago
- Read fcs files.☆12Nov 13, 2025Updated 3 months ago
- 本文介绍的是利用学生身份可以享受到的相关学生优惠权益,但也希望各位享受权利的同时不要忘记自己的义务,不要售卖、转手自己的学生优惠资格,使得其他同学无法受益。☆18Jun 25, 2019Updated 6 years ago
- Pixel-realignment based self-supervised reconstruction for structured illumination microscopy☆10Jan 15, 2024Updated 2 years ago
- ☆12Sep 9, 2024Updated last year
- AIMS - Automated Immune Molecule Separator: An analysis pipeline for distinguishing distinct subsets of Ig and MHC molecules. See below s…☆10Jul 25, 2025Updated 6 months ago
- MICCAI 2023: Morphology-inspired Unsupervised Gland Segmentation via Selective Semantic Grouping☆10Sep 27, 2025Updated 4 months ago
- An accelerated framework for manipulating and interpreting high-throughput sequencing data☆26Jul 9, 2013Updated 12 years ago
- Awesome list for Computational Physiology☆10Oct 29, 2025Updated 3 months ago
- ☆10May 2, 2016Updated 9 years ago
- General Image Analysis of Nuclei-containing Images☆10Jul 11, 2025Updated 7 months ago
- ☆12Mar 9, 2025Updated 11 months ago
- ☆10Nov 5, 2020Updated 5 years ago
- analyze_geo_microarrays.py : Differential expression analysis of published microarrays datasets from the NCBI Gene Expression Omnibus (GE…☆11Aug 1, 2021Updated 4 years ago
- Finite Element tools in Julia: Meshing of medical images☆11Apr 18, 2025Updated 9 months ago
- H&E ROI-Level and WSI-Level Nuclei Segmentation with HoVer-Net☆10Jul 30, 2024Updated last year
- Multiscale simulation of multi-cellular system☆11Feb 8, 2026Updated last week
- SpotMAX: a generalist framework for multi-dimensional automatic spot detection and quantification☆14Jan 14, 2026Updated last month
- ☆13Sep 13, 2024Updated last year
- SClineager: a Bayesian hierarchical model that performs lineage tracing of single cells based on genetic markers☆10Apr 30, 2024Updated last year
- RTDETRv2 re-implementation using PyTorch☆10Oct 1, 2024Updated last year
- An ImageJ/FIJI plugin for multi-channel Hyperstack alignment (registration)☆13Dec 7, 2022Updated 3 years ago