jono-m / OrganoIDLinks
☆28Updated last year
Alternatives and similar repositories for OrganoID
Users that are interested in OrganoID are comparing it to the libraries listed below
Sorting:
- A Python GUI-based framework for segmentation, tracking and cell cycle annotations of microscopy data☆186Updated this week
- Cloud-based data annotation tools for biological images☆82Updated last year
- An introduction to deepcell and deep learning☆154Updated last year
- CellProfiler tutorial pipelines and images☆98Updated last month
- ☆203Updated last month
- ☆91Updated last month
- Python Jupyter notebooks for BioImageAnalysis, GPU-accelerated image processing, bio-image data science and more☆151Updated 2 months ago
- Nellie: Automated organelle segmentation, tracking, and hierarchical feature extraction in 2D/3D live-cell microscopy☆86Updated this week
- A self-explanatory, hands-on intro to bioimage analysis in python. Slightly outdated but still much liked by learners.☆98Updated 2 years ago
- ☆31Updated 10 months ago
- an extension that wraps a Cellpose environment such that WSI can be analyzed using Cellpose through QuPath.☆83Updated last week
- ☆35Updated last year
- PAthological QUpath Obsession - QuPath and Python conversations☆126Updated 3 months ago
- Deep Learning Library for Single Cell Analysis☆471Updated last year
- ASHLAR: Alignment by Simultaneous Harmonization of Layer/Adjacency Registration☆156Updated 3 months ago
- Codebase for "A Foundation Model for Cell Segmentation"☆116Updated 3 weeks ago
- Segment Anything for Histopathology☆53Updated 2 months ago
- multimodal whole slide image registration in a graph structure☆96Updated last year
- Multiple-choice microscopy pipeline☆143Updated 3 weeks ago
- Learn morphological states of dynamic cells☆12Updated 2 years ago
- Piecewise alignment for layers of mosaics☆29Updated 3 months ago
- Lecture materials "Bio-image analysis, biostatistics, programming and machine learning for computational biology" at the Center of Molecu…☆230Updated 2 years ago
- QuPath extension for Segment Anything Model (SAM)☆125Updated 4 months ago
- version 1 scripts for CODA☆58Updated last year
- Omnipose: a high-precision solution for morphology-independent cell segmentation☆129Updated last week
- ☆32Updated 4 months ago
- SplineDist: Automated Cell Segmentation with Spline Curves☆69Updated last year
- An introduction to bioimage analysis - http://bioimagebook.github.io☆74Updated 3 months ago
- ☆57Updated 9 months ago
- Open source Python library for building bioimage analysis pipelines☆187Updated this week