biocommons / biocommons.seqrepoLinks
non-redundant, compressed, journalled, file-based storage for biological sequences
☆42Updated this week
Alternatives and similar repositories for biocommons.seqrepo
Users that are interested in biocommons.seqrepo are comparing it to the libraries listed below
Sorting:
- Universal Transcript Archive: comprehensive genome-transcript alignments; multiple transcript sources, versions, and alignment methods; a…☆66Updated 4 months ago
- Transcript versions for HGVS libraries☆33Updated last week
- Toil workflows for common genomic pipelines☆33Updated 5 years ago
- Python client for GA4GH htsget protocol☆15Updated 2 years ago
- Sparse Project VCF: evolution of VCF to encode population genotype matrices efficiently☆58Updated last year
- A fast Python library for VCF files leveraging Cython for speed.☆52Updated 7 years ago
- Annotation of VCF variants with functional impact and from databases (executable+library)☆59Updated last week
- Tools for next-generation sequencing analysis☆88Updated 6 years ago
- CLAMMS is a scalable tool for detecting common and rare copy number variants from whole-exome sequencing data.☆29Updated 4 years ago
- Workflow Description Language compiler for the DNAnexus platform☆41Updated 2 years ago
- Utilities to create and analyze gVCF files☆38Updated 8 years ago
- Server wrapper that turns command line tools into web services☆61Updated 6 years ago
- conda recipes for genomic data☆85Updated 4 years ago
- ☆27Updated 2 years ago
- VAPr: A Python package for NoSQL variant data storage, annotation and prioritization☆36Updated 4 years ago
- Chanjo provides a better way to analyze coverage data in clinical sequencing.☆51Updated 7 months ago
- GA4GH Variation Representation Python Implementation☆58Updated this week
- VarSim: A high-fidelity simulation validation framework for high-throughput genome sequencing with cancer applications☆86Updated 10 months ago
- a wee tool for random access into BGZF files.☆85Updated 7 years ago
- Import a CWL workflow specification to Nextflow script (experimental)☆27Updated 6 years ago
- Annotate models of genetic inheritance patterns in variant files (vcf files)☆82Updated last month
- PathOS is a clinical application for filtering, analysing and reporting on NGS variants☆29Updated 4 years ago
- Workflows used for WGS data processing -- replaced by https://github.com/gatk-workflows/gatk4-genome-processing-pipeline☆56Updated 5 years ago
- create a gemini-compatible database from a VCF☆56Updated 4 years ago
- LIkelihood Ratio Interpretation of Clinical AbnormaLities☆29Updated last month
- Website to analyze conflicting assertions in ClinVar☆18Updated last year
- A pipelining tool to automate and standardise bioinformatics analyses on cluster environments.☆97Updated 2 years ago
- Flexible genotype query among 30,000+ samples whole-genome☆95Updated 5 years ago
- Efficient handling of FASTQ files from Python☆51Updated this week
- filtering trio-based genetic variants in VCFs for clinical review☆21Updated 4 years ago