biocommons / biocommons.seqrepoLinks
non-redundant, compressed, journalled, file-based storage for biological sequences
☆41Updated 2 months ago
Alternatives and similar repositories for biocommons.seqrepo
Users that are interested in biocommons.seqrepo are comparing it to the libraries listed below
Sorting:
- Universal Transcript Archive: comprehensive genome-transcript alignments; multiple transcript sources, versions, and alignment methods; a…☆65Updated 2 months ago
- Transcript versions for HGVS libraries☆31Updated this week
- Toil workflows for common genomic pipelines☆33Updated 5 years ago
- What is true, thank you, ernestly. A large variant benchmarking tool analogous to hap.py for small variants.☆32Updated last year
- Samwell: a python package for using genomic files... well☆20Updated 2 years ago
- (WIP) best-practices workflow for rare disease☆60Updated 11 months ago
- create a gemini-compatible database from a VCF☆56Updated 4 years ago
- conda recipes for genomic data☆85Updated 3 years ago
- Chanjo provides a better way to analyze coverage data in clinical sequencing.☆50Updated 6 months ago
- Sparse Project VCF: evolution of VCF to encode population genotype matrices efficiently☆58Updated last year
- Manuscript describing ChronQC is now available online in Bioinformatics☆18Updated 6 years ago
- filtering trio-based genetic variants in VCFs for clinical review☆21Updated 4 years ago
- ☆29Updated 4 years ago
- Genome-wide reconstruction of complex structural variants☆39Updated 3 years ago
- GA4GH Variation Representation Python Implementation☆57Updated this week
- TIDDIT - structural variant calling☆73Updated 2 months ago
- a pileup library that embraces the huge☆43Updated 4 years ago
- CLAMMS is a scalable tool for detecting common and rare copy number variants from whole-exome sequencing data.☆29Updated 4 years ago
- Malleable All-seeing Journal Of Research Artifacts☆36Updated 2 years ago
- overlapping bases in read-pairs from a fragment indicate accuracy and reveal error-prone sites☆33Updated 2 weeks ago
- WDL tools for parsing, type-checking, and more☆25Updated 2 months ago
- ☆37Updated 4 years ago
- hgvslib provides functions to parse and compare the equivalency of variant strings described according to Human Genome Variation Society …☆18Updated 2 years ago
- Annotate models of genetic inheritance patterns in variant files (vcf files)☆79Updated 2 months ago
- A fast Python library for VCF files leveraging Cython for speed.☆52Updated 7 years ago
- Variant Interpretation Pipeline☆39Updated this week
- MetaSV: An accurate and integrative structural-variant caller for next generation sequencing☆56Updated 7 years ago
- prioritize effects of variant annotations from VEP, SnpEff, et al.☆34Updated 6 months ago
- Bioinformatic Analysis pipeLine for SomAtic Mutations In Cancer☆47Updated this week
- The Ensembl Variation Perl API and SQL schema☆28Updated 2 weeks ago