Alternatives and similar repositories for xopen:

Users that are interested in xopen are comparing it to the libraries listed below

• LUMC / pytest-workflow
  Configure workflow/pipeline tests using yaml files.
  ☆67Updated 7 months ago
• kylessmith / ailist
  Augmented Interval Tree implemented in Cython/C
  ☆19Updated last month
• brentp / interlap
  fast, pure-python interval overlap testing
  ☆52Updated 4 years ago
• pycompression / python-isal
  Faster zlib and gzip compatible compression and decompression by providing python bindings for the isa-l library.
  ☆48Updated last week
• aCLImatise / CliHelpParser
  Reads the output from CLI help commands, and generates machine readable schemas (CWL etc)
  ☆14Updated 4 years ago
• pepkit / peppy
  Project metadata manager for PEPs in Python
  ☆37Updated 5 months ago
• jdidion / xphyle
  Python library that facilitates opening, reading, and writing files (and file-like entities like URLs and streams) agnostic of compressio…
  ☆21Updated 4 months ago
• panoptes-organization / panoptes
  Monitor computational workflows in real time
  ☆71Updated 9 months ago
• sgkit-dev / vcf-zarr-spec
  VCF Zarr Specification
  ☆12Updated last week
• EliLillyCo / pytest-wdl
  WDL plugin for pytest
  ☆48Updated last year
• biocommons / bioutils
  provides common tools and lookup tables used primarily by the hgvs and uta packages
  ☆22Updated last week
• jupyter-widgets-contrib / ipyigv
  A Jupyter wrapper for the igv.js library (representation of genomic data)
  ☆26Updated 4 years ago
• snakemake / snakemake-executor-plugin-slurm
  A Snakemake executor plugin for submitting jobs to a SLURM cluster
  ☆29Updated this week
• snakemake / snakedeploy
  deploy a snakemake pipeline directly from version control (under development)
  ☆23Updated this week
• marcelm / dnaio
  Efficiently read and write sequencing data from Python
  ☆62Updated 4 months ago
• onecodex / taxonomy
  Python and Rust library for loading, saving, and manipulating taxonomic trees
  ☆37Updated 4 months ago
• rhpvorderman / sequali
  Fast sequencing data quality metrics
  ☆25Updated this week
• snakemake / snakeface
  The snakemake interface, currently works like a notebook (under development)
  ☆18Updated 3 years ago
• stjude-rust-labs / crankshaft
  A Rust-based, headless workflow execution framework supporting local, cloud, and HPC.
  ☆30Updated 2 weeks ago
• nextflow-io / nf-sqldb
  SQL support plugin for Nextflow
  ☆26Updated last month
• noamteyssier / bedrs
  bedtools-like functionality for interval sets in rust
  ☆49Updated 6 months ago
• Edinburgh-Genome-Foundry / genome_collector
  Easily download genomes and build BLAST/Bowtie indexes in Python
  ☆21Updated 2 years ago
• abdenlab / oxbow
  Read specialized NGS formats as data frames in R, Python, and more.
  ☆69Updated 3 months ago
• conda-incubator / conda-env-builder
  Build and maintain multiple custom conda environments all in one place.
  ☆37Updated 3 months ago
• BiocPy / GenomicRanges
  Container class to represent genomic locations and support genomic analysis
  ☆18Updated this week
• brentp / hts-zig
  ziglang + htslib
  ☆20Updated 3 years ago
• yhoogstrate / fastafs
  toolkit for file system virtualisation of random access compressed FASTA, FAI, DICT & TWOBIT files
  ☆22Updated 7 months ago
• brentp / fishers_exact_test
  Fishers Exact Test for Python (Cython)
  ☆64Updated 6 months ago
• snakemake-workflows / cookiecutter-snakemake-workflow
  A cookiecutter template for Snakemake workflows
  ☆57Updated 3 years ago
• manzt / pygv
  a minimal, scriptable genome browser for python
  ☆49Updated 2 months ago