Alternatives and similar repositories for xopen

Users that are interested in xopen are comparing it to the libraries listed below

• onecodex / taxonomy
  Python and Rust library for loading, saving, and manipulating taxonomic trees
  ☆37Updated last week
• brentp / interlap
  fast, pure-python interval overlap testing
  ☆52Updated 4 years ago
• kylessmith / ailist
  Augmented Interval Tree implemented in Cython/C
  ☆20Updated 4 months ago
• panoptes-organization / panoptes
  Monitor computational workflows in real time
  ☆73Updated last year
• pycompression / python-isal
  Faster zlib and gzip compatible compression and decompression by providing python bindings for the isa-l library.
  ☆50Updated last week
• brentp / fishers_exact_test
  Fishers Exact Test for Python (Cython)
  ☆65Updated 2 months ago
• LUMC / pytest-workflow
  Configure workflow/pipeline tests using yaml files.
  ☆68Updated 10 months ago
• jdidion / xphyle
  Python library that facilitates opening, reading, and writing files (and file-like entities like URLs and streams) agnostic of compressio…
  ☆22Updated last month
• pepkit / peppy
  Project metadata manager for PEPs in Python
  ☆37Updated 8 months ago
• clintval / genome-browser
  A lightweight Python graphing API for genomic features
  ☆15Updated 2 years ago
• brentp / quicksect
  a cythonized, extended version of the interval search tree in bx
  ☆30Updated 6 years ago
• vcflib / tabixpp
  C++ wrapper to tabix indexer
  ☆17Updated 3 weeks ago
• brentp / hts-python
  pythonic wrapper for libhts (moved to: https://github.com/quinlan-lab/hts-python)
  ☆49Updated 8 years ago
• ArcInstitute / binseq
  A high efficiency binary format for sequencing data
  ☆51Updated 2 weeks ago
• sgkit-dev / vcf-zarr-spec
  VCF Zarr Specification
  ☆13Updated 2 weeks ago
• snakemake / snakeface
  The snakemake interface, currently works like a notebook (under development)
  ☆18Updated 3 years ago
• brentp / vcf-bench
  evaluating vcf parsing libraries
  ☆19Updated 3 years ago
• johanneskoester / alpaca
  ALPACA is a caller for genomic variants (single nucleotide and small indels) from next-generation sequencing data that uses a novel algeb…
  ☆23Updated 6 months ago
• biocommons / bioutils
  provides common tools and lookup tables used primarily by the hgvs and uta packages
  ☆22Updated 3 months ago
• marcelm / dnaio
  Efficiently read and write sequencing data from Python
  ☆64Updated last week
• IQTLabs / freqgen
  🎯 Generate DNA sequences with specified amino acid, codon, and k-mer frequencies
  ☆16Updated 2 years ago
• Kingsford-Group / omhismb2019
  ☆23Updated last year
• broadinstitute / pyfrost
  Python bindings for Bifrost's compacted colored de Bruijn Graph with a NetworkX-compatible API
  ☆28Updated last year
• snakemake / snakemake-executor-plugin-slurm
  A Snakemake executor plugin for submitting jobs to a SLURM cluster
  ☆33Updated this week
• epi2me-labs / ezcharts
  ☆20Updated last month
• neherlab / ffpopsim
  FFPopSim is a collection of C++ classes and a Python interface for efficient simulation of large populations, in particular when the prod…
  ☆14Updated 2 weeks ago
• bihealth / vcfpy
  Python 3 library with good support for both reading and writing VCF
  ☆109Updated 11 months ago
• felsenst / phylip
  PHYLIP package starting with version 4.0a
  ☆19Updated last week
• pygridtools / drmaa-python
  Python wrapper around the C DRMAA library.
  ☆108Updated 6 years ago
• brentp / hileup
  horizontal pileup
  ☆16Updated 2 years ago