Alternatives and similar repositories for xopen:

Users that are interested in xopen are comparing it to the libraries listed below

• kylessmith / ailist
  Augmented Interval Tree implemented in Cython/C
  ☆20Updated 3 months ago
• onecodex / taxonomy
  Python and Rust library for loading, saving, and manipulating taxonomic trees
  ☆37Updated 3 weeks ago
• brentp / interlap
  fast, pure-python interval overlap testing
  ☆52Updated 4 years ago
• panoptes-organization / panoptes
  Monitor computational workflows in real time
  ☆73Updated 11 months ago
• marcelm / dnaio
  Efficiently read and write sequencing data from Python
  ☆63Updated last month
• brentp / fishers_exact_test
  Fishers Exact Test for Python (Cython)
  ☆65Updated last month
• snakemake / snakemake-executor-plugin-slurm
  A Snakemake executor plugin for submitting jobs to a SLURM cluster
  ☆31Updated this week
• pycompression / python-isal
  Faster zlib and gzip compatible compression and decompression by providing python bindings for the isa-l library.
  ☆49Updated last month
• lgautier / fastq-and-furious
  Efficient handling of FASTQ files from Python
  ☆51Updated 8 months ago
• LUMC / pytest-workflow
  Configure workflow/pipeline tests using yaml files.
  ☆68Updated 9 months ago
• yhoogstrate / fastafs
  toolkit for file system virtualisation of random access compressed FASTA, FAI, DICT & TWOBIT files
  ☆22Updated 8 months ago
• vinlyx / mgzip
  A multi-threading implement of Python gzip module
  ☆55Updated last year
• jdidion / xphyle
  Python library that facilitates opening, reading, and writing files (and file-like entities like URLs and streams) agnostic of compressio…
  ☆22Updated last week
• pyranges / ncls
  The Nested Containment List for Python. Basically a static interval-tree that is silly fast for both construction and lookups.
  ☆220Updated 8 months ago
• ArcInstitute / binseq
  A high efficiency binary format for sequencing data
  ☆45Updated last week
• pepkit / peppy
  Project metadata manager for PEPs in Python
  ☆37Updated 7 months ago
• vcflib / tabixpp
  C++ wrapper to tabix indexer
  ☆17Updated this week
• endrebak / poranges
  pyranges/bioframe for polars
  ☆18Updated last year
• alimanfoo / vcfnp
  Load numpy arrays and HDF5 files from VCF (variant call format)
  ☆31Updated 7 years ago
• EliLillyCo / pytest-wdl
  WDL plugin for pytest
  ☆48Updated last year
• dib-lab / screed
  a simple read-only sequence database, designed for short reads
  ☆66Updated last year
• brentp / quicksect
  a cythonized, extended version of the interval search tree in bx
  ☆30Updated 5 years ago
• noamteyssier / bedrs
  bedtools-like functionality for interval sets in rust
  ☆52Updated 8 months ago
• aaronmussig / PhyloDM
  Efficient calculation of phylogenetic distance matrices.
  ☆47Updated 7 months ago
• sgkit-dev / vcf-zarr-spec
  VCF Zarr Specification
  ☆13Updated 2 weeks ago
• aCLImatise / CliHelpParser
  Reads the output from CLI help commands, and generates machine readable schemas (CWL etc)
  ☆14Updated 4 years ago
• noamteyssier / gia
  gia: Genomic Interval Arithmetic
  ☆62Updated 8 months ago
• epi2me-labs / ezcharts
  ☆20Updated 2 weeks ago
• RagnarGrootKoerkamp / oxford-bioinformatics-template
  Improved version of the Oxford Bioinformatics paper template
  ☆12Updated 8 months ago
• bihealth / vcfpy
  Python 3 library with good support for both reading and writing VCF
  ☆109Updated 10 months ago