pycompression / xopen
Open compressed files in Python
☆73Updated 2 weeks ago
Alternatives and similar repositories for xopen:
Users that are interested in xopen are comparing it to the libraries listed below
- fast, pure-python interval overlap testing☆52Updated 4 years ago
- Configure workflow/pipeline tests using yaml files.☆67Updated 8 months ago
- Python and Rust library for loading, saving, and manipulating taxonomic trees☆37Updated last week
- Augmented Interval Tree implemented in Cython/C☆20Updated 3 months ago
- Python library that facilitates opening, reading, and writing files (and file-like entities like URLs and streams) agnostic of compressio…☆22Updated 6 months ago
- Efficiently read and write sequencing data from Python☆62Updated last week
- Fishers Exact Test for Python (Cython)☆65Updated 3 weeks ago
- Faster zlib and gzip compatible compression and decompression by providing python bindings for the isa-l library.☆48Updated 3 weeks ago
- a cythonized, extended version of the interval search tree in bx☆30Updated 5 years ago
- Monitor computational workflows in real time☆72Updated 10 months ago
- evaluating vcf parsing libraries☆19Updated 3 years ago
- C++ wrapper to tabix indexer☆17Updated last year
- The snakemake interface, currently works like a notebook (under development)☆18Updated 3 years ago
- ☆18Updated last month
- Project metadata manager for PEPs in Python☆37Updated 6 months ago
- Efficient handling of FASTQ files from Python☆51Updated 7 months ago
- fast, memory-efficient, pythonic (and command-line) access to fasta sequence files☆87Updated 7 years ago
- SQL support plugin for Nextflow☆26Updated 2 months ago
- VCF Zarr Specification☆12Updated last month
- Fast sequencing data quality metrics☆26Updated last week
- Cython bindings and Python interface to trimAl, a tool for automated alignment trimming. Now with SIMD!☆23Updated last month
- provides common tools and lookup tables used primarily by the hgvs and uta packages☆22Updated last month
- FFPopSim is a collection of C++ classes and a Python interface for efficient simulation of large populations, in particular when the prod…☆14Updated last year
- Retrieve data in genomic intervals with a Python interface for tabix.☆82Updated 7 years ago
- Reads the output from CLI help commands, and generates machine readable schemas (CWL etc)☆14Updated 4 years ago
- TreeSwift: Fast tree module for Python 3☆80Updated 4 months ago
- Benchmarking pairwise aligners☆36Updated 2 months ago
- Bam Read Index - Extract alignments from a bam file by readname☆25Updated 11 months ago
- Build and maintain multiple custom conda environments all in one place.☆37Updated 4 months ago
- Python bindings for Bifrost's compacted colored de Bruijn Graph with a NetworkX-compatible API☆28Updated last year