pycompression / xopenLinks
Open compressed files in Python
☆75Updated 2 months ago
Alternatives and similar repositories for xopen
Users that are interested in xopen are comparing it to the libraries listed below
Sorting:
- fast, pure-python interval overlap testing☆52Updated 4 years ago
- Augmented Interval Tree implemented in Cython/C☆20Updated 6 months ago
- Configure workflow/pipeline tests using yaml files.☆68Updated last year
- a cythonized, extended version of the interval search tree in bx☆30Updated 6 years ago
- Python bindings to bwa mem☆32Updated 5 years ago
- Fishers Exact Test for Python (Cython)☆66Updated 4 months ago
- Monitor computational workflows in real time☆74Updated last year
- Python library that facilitates opening, reading, and writing files (and file-like entities like URLs and streams) agnostic of compressio…☆23Updated 3 months ago
- A Snakemake executor plugin for submitting jobs to a SLURM cluster☆40Updated 2 weeks ago
- pyranges/bioframe for polars☆18Updated 2 years ago
- A job submitter for Portable Encapsulated Projects☆22Updated 5 months ago
- a minimal, scriptable genome browser for python☆51Updated 7 months ago
- Python and Rust library for loading, saving, and manipulating taxonomic trees☆37Updated last month
- Efficiently read and write sequencing data from Python☆65Updated 2 months ago
- Python wrapper around Nextflow.☆59Updated last week
- Plugin for PyCharm / IntelliJ IDEA Platform IDEs which adds support for Snakemake language.☆62Updated 3 months ago
- horizontal pileup☆16Updated 2 years ago
- VCF Zarr Specification☆15Updated 2 months ago
- convert reads from repeated measures of same piece of DNA into spaced matricies for deep learners.☆14Updated 2 years ago
- Nucleotide Archival Format - Compressed file format for DNA/RNA/protein sequences☆58Updated last week
- Reads the output from CLI help commands, and generates machine readable schemas (CWL etc)☆14Updated 4 years ago
- WDL plugin for pytest☆48Updated 2 years ago
- Build sourmash databases for genbank.☆12Updated 2 years ago
- Python bindings to spoa☆20Updated last year
- The python binding for D4 format☆16Updated 3 years ago
- Python language bindings for bwa☆10Updated last month
- Fast sequencing data quality metrics☆27Updated 2 months ago
- Convert vcf in parquet☆27Updated 6 months ago
- PyRanges as a DataFrame subclass.☆18Updated last week
- evaluating vcf parsing libraries☆19Updated 3 years ago