Alternatives and similar repositories for workflow-template-wdl:

Users that are interested in workflow-template-wdl are comparing it to the libraries listed below

• SciLifeLab / TIDDIT
  TIDDIT - structural variant calling
  ☆74Updated 3 weeks ago
• Illumina / witty.er
  What is true, thank you, ernestly. A large variant benchmarking tool analogous to hap.py for small variants.
  ☆32Updated last year
• ryanlayer / stix
  Structural Variant Index
  ☆72Updated 3 months ago
• fakedrtom / SVAFotate
  ☆39Updated 6 months ago
• rhpvorderman / sequali
  Fast sequencing data quality metrics
  ☆26Updated last week
• nextflow-io / nf-validation
  Params validation plugin for Nextflow pipelines
  ☆49Updated 7 months ago
• mribeirodantas / NextflowSnippets
  This repository hosts a large collection of Nextflow snippets
  ☆57Updated 2 months ago
• Clinical-Genomics / BALSAMIC
  Bioinformatic Analysis pipeLine for SomAtic Mutations In Cancer
  ☆45Updated this week
• nanoporegenomics / napu_wf
  WDL workflows for variant calling and assembly using ONT
  ☆33Updated last week
• vembrane / vembrane
  vembrane filters VCF records using python expressions
  ☆58Updated 2 weeks ago
• jbelyeu / SV-plaudit
  Pipeline for structural variant image curation and analysis.
  ☆48Updated 3 years ago
• genomic-medicine-sweden / nallo
  An analysis pipeline for long-reads from both PacBio and Oxford Nanopore Technologies (ONT), written in Nextflow.
  ☆23Updated this week
• TimD1 / vcfdist
  vcfdist: Accurately benchmarking phased variant calls
  ☆79Updated this week
• srbehera / FixItFelix
  ☆22Updated 2 years ago
• ash9nov / CNV-calling-from-Target-panel-based-NGS-data
  Detection of CNVs (deletion/duplication) in target panel based NGS data
  ☆16Updated last year
• lbcb-sci / ra
  Assembler for raw de novo genome assembly of long uncorrected reads.
  ☆37Updated 5 years ago
• nf-core / variantbenchmarking
  Pipeline to evaluate and validate the accuracy of variant calling methods in genomic research
  ☆27Updated this week
• fritzsedlazeck / parliament2
  Runs a combination of tools to generate structural variant calls on whole-genome sequencing data
  ☆47Updated 4 years ago
• PacificBiosciences / svpack
  Structural variant (SV) analysis tools
  ☆36Updated 9 months ago
• EI-CoreBioinformatics / portcullis
  Splice junction analysis and filtering from BAM files
  ☆40Updated 3 years ago
• brentp / duphold
  don't get DUP'ed or DEL'ed by your putative SVs.
  ☆105Updated 4 years ago
• BimberLab / DISCVRSeq
  A collection of command line tools for working with sequencing data
  ☆51Updated 2 weeks ago
• brwnj / covviz
  Multi-sample genome coverage viewer to observe large, coverage-based anomalies alongside annotations and sample metadata
  ☆56Updated 3 years ago
• UCSC-nanopore-cgl / margin
  ☆30Updated 2 years ago
• aquaskyline / LRSIM
  10x Genomics Reads Simulator
  ☆45Updated last year
• nanoporetech / wub
  Tools and software library developed by the ONT Applications group
  ☆62Updated 4 years ago
• myriad-opensource / samwell
  Samwell: a python package for using genomic files... well
  ☆20Updated 2 years ago
• genepi / haplocheck
  Phylogeny-based Contamination Detection in Mitochondrial and Whole-Genome Sequencing Studies
  ☆18Updated last year
• biocorecrg / MOP2
  Master of Pores 2
  ☆23Updated 3 months ago
• tk2 / RetroSeq
  RetroSeq is a bioinformatics tool that searches for mobile element insertions from aligned reads in a BAM file and a library of reference…
  ☆65Updated 2 years ago