JetBrains-Research / snakecharmLinks
Plugin for PyCharm / IntelliJ IDEA Platform IDEs which adds support for Snakemake language.
☆62Updated 2 months ago
Alternatives and similar repositories for snakecharm
Users that are interested in snakecharm are comparing it to the libraries listed below
Sorting:
- Monitor computational workflows in real time☆73Updated last year
- Documentation of the Snakemake-Profiles project.☆54Updated 3 years ago
- A cookiecutter template for Snakemake workflows☆59Updated 3 years ago
- Cookiecutter for snakemake slurm profile☆133Updated last year
- Efficient handling of FASTQ files from Python☆51Updated 3 months ago
- fast, memory-efficient, pythonic (and command-line) access to fasta sequence files☆88Updated 7 years ago
- A Github action for running a Snakemake workflow☆60Updated 4 months ago
- Fishers Exact Test for Python (Cython)☆66Updated 7 months ago
- Efficiently read and write sequencing data from Python☆67Updated 3 weeks ago
- Simple pure Python SAM parser and objects for working with SAM records☆63Updated 3 years ago
- Snakemake profile for running jobs on an LSF cluster☆38Updated last year
- conda recipes for genomic data☆84Updated 4 years ago
- Bio-dockers: dockerized bioinformatic tools☆32Updated 2 months ago
- A Snakemake executor plugin for submitting jobs to a SLURM cluster☆42Updated this week
- Sequana: a set of Snakemake NGS pipelines☆148Updated 2 weeks ago
- Super small biological datasets for unit testing☆62Updated 5 years ago
- Very simple, pure python, BAM file reader☆79Updated 6 years ago
- A simple Snakemake profile for Slurm without --cluster-config☆162Updated last year
- Reference genome resource manager☆74Updated last year
- Pure-python implementation of UCSC liftOver genome coordinate conversion☆99Updated last year
- Parse Illumina sample sheets with Python☆50Updated last year
- Utilities for building and managing bioconda recipes☆103Updated 2 weeks ago
- ☆17Updated 2 years ago
- Testing building mulled containers for multi-requirement tools.☆80Updated this week
- Turn an existing conda environment into a Singularity container☆81Updated 2 years ago
- Making Snakemake workflows into full-fledged command line tools since 1999.☆51Updated 7 years ago
- A template for standard compliant snakemake-workflows☆116Updated last week
- This repository contains the source code of JUDI, a workflow management system for developing complex bioinformatics software with many p…☆33Updated 3 years ago
- deploy a snakemake pipeline directly from version control (under development)☆25Updated 2 weeks ago
- Demonstrating best practices for bioinformatics command line tools☆26Updated 5 years ago