Alternatives and similar repositories for snakecharm

Users that are interested in snakecharm are comparing it to the libraries listed below

• clintval / sample-sheet
  Parse Illumina sample sheets with Python
  ☆50Updated last year
• panoptes-organization / panoptes
  Monitor computational workflows in real time
  ☆74Updated last year
• Snakemake-Profiles / doc
  Documentation of the Snakemake-Profiles project.
  ☆54Updated 3 years ago
• BioContainers / multi-package-containers
  Testing building mulled containers for multi-requirement tools.
  ☆75Updated this week
• marcelm / dnaio
  Efficiently read and write sequencing data from Python
  ☆64Updated last month
• brentp / fishers_exact_test
  Fishers Exact Test for Python (Cython)
  ☆65Updated 3 months ago
• Snakemake-Profiles / slurm
  Cookiecutter for snakemake slurm profile
  ☆132Updated last year
• apierleoni / BioGraPy
  Biological Graphic tool in Python
  ☆34Updated 5 years ago
• snakemake-workflows / cookiecutter-snakemake-workflow
  A cookiecutter template for Snakemake workflows
  ☆59Updated 3 years ago
• manzt / pygv
  a minimal, scriptable genome browser for python
  ☆51Updated 6 months ago
• brentp / pyfasta
  fast, memory-efficient, pythonic (and command-line) access to fasta sequence files
  ☆87Updated 7 years ago
• sbg / sevenbridges-python
  SevenBridges Python Api bindings
  ☆46Updated 4 months ago
• mdshw5 / simplesam
  Simple pure Python SAM parser and objects for working with SAM records
  ☆64Updated 3 years ago
• igvteam / igv-notebook
  Module for embedding igv.js in an IPython notebook
  ☆75Updated 4 months ago
• snakemake / snakemake-github-action
  A Github action for running a Snakemake workflow
  ☆58Updated last week
• moonso / vcf_parser
  Simple vcf parser, based on PyVCF
  ☆46Updated 6 years ago
• sequana / sequana
  Sequana: a set of Snakemake NGS pipelines
  ☆146Updated 4 months ago
• jsh58 / NGmerge
  Merging paired-end reads and removing adapters
  ☆44Updated 3 months ago
• jambler24 / GenGraph
  A repository for the GenGraph toolkit for the creation and manipulation of graph genomes
  ☆51Updated 3 years ago
• Snakemake-Profiles / lsf
  Snakemake profile for running jobs on an LSF cluster
  ☆38Updated 10 months ago
• pyranges / pyranges_1.x
  PyRanges as a DataFrame subclass.
  ☆17Updated this week
• ncsa / NEAT
  NEAT (NExt-generation Analysis Toolkit) simulates next-gen sequencing reads and can learn simulation parameters from real data.
  ☆58Updated 2 weeks ago
• bentsherman / nf-boost
  Experimental features for Nextflow
  ☆43Updated 3 months ago
• acg-team / tral
  Tandem Repeat Annotation Library
  ☆25Updated 2 years ago
• konstantint / pyliftover
  Pure-python implementation of UCSC liftOver genome coordinate conversion
  ☆95Updated last year
• goodwright / nextflow.py
  Python wrapper around Nextflow.
  ☆59Updated last week
• mlafave / sam2pairwise
  sam2pairwise takes a SAM file and uses the CIGAR and MD tag to reconstruct the pairwise alignment of each read.
  ☆44Updated 10 years ago
• alexcoppe / bio-dockers
  Bio-dockers: dockerized bioinformatic tools
  ☆32Updated 5 months ago
• brentp / geneimpacts
  prioritize effects of variant annotations from VEP, SnpEff, et al.
  ☆34Updated 6 months ago
• sanger-pathogens / Fastaq
  Python3 scripts to manipulate FASTA and FASTQ files
  ☆71Updated 3 months ago