JetBrains-Research / snakecharm
Plugin for PyCharm / IntelliJ IDEA Platform IDEs which adds support for Snakemake language.
☆61Updated 3 months ago
Alternatives and similar repositories for snakecharm:
Users that are interested in snakecharm are comparing it to the libraries listed below
- A cookiecutter template for Snakemake workflows☆57Updated 3 years ago
- Extension for Jupyter which integrates igv.js☆154Updated 2 years ago
- Cookiecutter for snakemake slurm profile☆129Updated 9 months ago
- fast, memory-efficient, pythonic (and command-line) access to fasta sequence files☆87Updated 7 years ago
- Testing building mulled containers for multi-requirement tools.☆70Updated last week
- Sequana: a set of Snakemake NGS pipelines☆145Updated last week
- Monitor computational workflows in real time☆70Updated 8 months ago
- Documentation of the Snakemake-Profiles project.☆52Updated 2 years ago
- Bio-dockers: dockerized bioinformatic tools☆32Updated last month
- Parse Illumina sample sheets with Python☆50Updated 10 months ago
- List of computational resources for analyzing microbial sequencing data.☆66Updated last year
- Python3 scripts to manipulate FASTA and FASTQ files☆70Updated 3 months ago
- Reference genome resource manager☆74Updated last year
- A repository for the GenGraph toolkit for the creation and manipulation of graph genomes☆51Updated 3 years ago
- A simple pythonic interface to biomart.☆55Updated 5 years ago
- This repository contains the source code of JUDI, a workflow management system for developing complex bioinformatics software with many p…☆33Updated 3 years ago
- Config files used to define parameters specific to compute environments at different Institutions☆94Updated last week
- Very simple, pure python, BAM file reader☆79Updated 6 years ago
- A Github action for running a Snakemake workflow☆58Updated 3 weeks ago
- Module for embedding igv.js in an IPython notebook☆73Updated last week
- SevenBridges Python Api bindings☆46Updated this week
- Demonstrating best practices for bioinformatics command line tools☆116Updated 4 years ago
- An imagemagick-like frontend to Biopython SeqIO☆115Updated 11 months ago
- Python biomart API☆65Updated last year
- Nanopore Plasmid Sequencing☆32Updated last year
- Demonstrating best practices for bioinformatics command line tools☆26Updated 4 years ago
- Example Nextflow pipelines and programming techniques☆105Updated 2 months ago
- Python bindings to bwa mem☆32Updated 4 years ago
- Scallop is a reference-based transcriptome assembler for RNA-seq☆89Updated 3 years ago
- Web application to collect and visualise data across multiple MultiQC runs.☆97Updated 2 months ago