JetBrains-Research / snakecharmLinks
Plugin for PyCharm / IntelliJ IDEA Platform IDEs which adds support for Snakemake language.
☆62Updated last month
Alternatives and similar repositories for snakecharm
Users that are interested in snakecharm are comparing it to the libraries listed below
Sorting:
- A cookiecutter template for Snakemake workflows☆59Updated 3 years ago
- Monitor computational workflows in real time☆73Updated last year
- Documentation of the Snakemake-Profiles project.☆54Updated 3 years ago
- A Github action for running a Snakemake workflow☆60Updated 3 months ago
- Cookiecutter for snakemake slurm profile☆132Updated last year
- Project metadata manager for PEPs in Python☆37Updated this week
- Fishers Exact Test for Python (Cython)☆66Updated 6 months ago
- This repository contains the source code of JUDI, a workflow management system for developing complex bioinformatics software with many p…☆33Updated 3 years ago
- Simple pure Python SAM parser and objects for working with SAM records☆63Updated 3 years ago
- Efficient handling of FASTQ files from Python☆51Updated 2 months ago
- fast, memory-efficient, pythonic (and command-line) access to fasta sequence files☆88Updated 7 years ago
- Reference genome resource manager☆74Updated last year
- Utilities for building and managing bioconda recipes☆103Updated last month
- Very simple, pure python, BAM file reader☆79Updated 6 years ago
- ☆17Updated last year
- Parse Illumina sample sheets with Python☆50Updated last year
- Pure-python implementation of UCSC liftOver genome coordinate conversion☆99Updated last year
- Sequana: a set of Snakemake NGS pipelines☆146Updated 2 months ago
- Python wrapper around Nextflow.☆60Updated last month
- Extension for Jupyter which integrates igv.js☆154Updated 2 years ago
- Retrieve data in genomic intervals with a Python interface for tabix.☆82Updated 8 years ago
- Demonstrating best practices for bioinformatics command line tools☆26Updated 5 years ago
- Demonstrating best practices for bioinformatics command line tools☆116Updated 5 years ago
- python access to UCSC genomes database☆136Updated 5 years ago
- Validate FastQ Files☆36Updated 6 years ago
- SevenBridges Python Api bindings☆46Updated 7 months ago
- Testing building mulled containers for multi-requirement tools.☆80Updated this week
- Turn an existing conda environment into a Singularity container☆81Updated 2 years ago
- prioritize effects of variant annotations from VEP, SnpEff, et al.☆34Updated 10 months ago
- A simple pythonic interface to biomart.☆56Updated 5 years ago