JetBrains-Research / snakecharmLinks
Plugin for PyCharm / IntelliJ IDEA Platform IDEs which adds support for Snakemake language.
☆62Updated last month
Alternatives and similar repositories for snakecharm
Users that are interested in snakecharm are comparing it to the libraries listed below
Sorting:
- A cookiecutter template for Snakemake workflows☆59Updated 3 years ago
- Biological Graphic tool in Python☆34Updated 5 years ago
- Monitor computational workflows in real time☆73Updated last year
- List of computational resources for analyzing microbial sequencing data.☆68Updated last year
- Documentation of the Snakemake-Profiles project.☆54Updated 3 years ago
- Snakemake profile for running jobs on an LSF cluster☆37Updated 10 months ago
- Testing building mulled containers for multi-requirement tools.☆73Updated this week
- Very simple, pure python, BAM file reader☆79Updated 6 years ago
- Cookiecutter for snakemake slurm profile☆132Updated last year
- Sequana: a set of Snakemake NGS pipelines☆146Updated 3 months ago
- python access to UCSC genomes database☆135Updated 4 years ago
- Extension for Jupyter which integrates igv.js☆154Updated 2 years ago
- Rapid sensitive and accurate read mapping via quasi-mapping☆89Updated 5 years ago
- Super small biological datasets for unit testing☆60Updated 5 years ago
- A tool for fast and accurate summarizing of variant calling format (VCF) files☆60Updated 2 years ago
- A simple pythonic interface to biomart.☆55Updated 5 years ago
- Scalable RNA-seq analysis☆73Updated 4 years ago
- A utility for easy downloading of reads from next-gen sequencing repositories like NCBI SRA☆105Updated 5 years ago
- Nextflow plugin for VIM☆50Updated 2 years ago
- Bio-dockers: dockerized bioinformatic tools☆32Updated 4 months ago
- Long read production pipelines☆145Updated this week
- TADbit is a complete Python library to deal with all steps to analyze, model and explore 3C-based data. With TADbit the user can map FAST…☆102Updated last week
- Pure-python implementation of UCSC liftOver genome coordinate conversion☆95Updated last year
- SevenBridges Python Api bindings☆46Updated 3 months ago
- Parse Illumina sample sheets with Python☆50Updated last year
- machine-readable file format for genomic library sequence and structure☆120Updated 2 months ago
- List of tools and resources related to the 10x Genomics GEMCode/Chromium system☆84Updated 6 years ago
- Fishers Exact Test for Python (Cython)☆65Updated 2 months ago
- An imagemagick-like frontend to Biopython SeqIO☆115Updated last year
- A template for standard compliant snakemake-workflows☆98Updated 2 weeks ago