scDoRI (single-cell Deep multi-Omic Regulatory Inference) is a deep learning model to infer enhancer-mediated gene regulatory networks (eGRNs) from single-cell multiome data (RNA + ATAC).
☆35Aug 15, 2026Updated this week
Alternatives and similar repositories for scDORI
Users that are interested in scDORI are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- factor models for omics data☆46Updated this week
- ☆20Jun 12, 2026Updated 2 months ago
- CellWalkR: An R Package for integrating single-cell and bulk data to resolve regulatory elements☆22Oct 8, 2025Updated 10 months ago
- Functional Inference of Gene Regulation☆55Jul 5, 2024Updated 2 years ago
- scooby: Modeling multi-modal genomic profiles from DNA sequence at single-cell resolution.☆69Aug 10, 2026Updated last week
- Deploy open-source AI quickly and easily - Special Bonus Offer • AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.
- Benchmark of GRNs using the GRETA pipeline☆33Jun 9, 2026Updated 2 months ago
- Pareto Task Inference in Python☆23Aug 10, 2026Updated last week
- Robust and scalable single-cell signature scoring☆28Jul 28, 2026Updated 3 weeks ago
- Multiome GRN inference.☆141Apr 10, 2026Updated 4 months ago
- End-to-end analysis of spatial multi-omics data☆123May 15, 2026Updated 3 months ago
- Sample representation benchmark for single-cell data☆13Jun 12, 2026Updated 2 months ago
- ☆15Feb 12, 2026Updated 6 months ago
- Context specific and dynamic gene regulatory network reconstruction and analysis☆129Aug 3, 2026Updated 2 weeks ago
- Single-cell Analysis of Perturbational Effects using Machine Learning☆20Oct 9, 2025Updated 10 months ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Code, data and analysis for moslin.☆15Oct 7, 2024Updated last year
- Robustness and applicability of transcription factor and pathway analysis tools on single-cell RNA-seq data☆30Mar 2, 2020Updated 6 years ago
- Parse ArchR arrow files to anndata h5ad☆16Dec 14, 2023Updated 2 years ago
- Code for the analysis performed in the paper "Transcription factor stoichiometry, motif affinity and syntax regulate single-cell chromati…☆14Oct 16, 2025Updated 10 months ago
- ☆12Nov 20, 2023Updated 2 years ago
- Camiel's scATAC-seq analysis pipeline☆15Apr 15, 2024Updated 2 years ago
- Functional and Learnable Cell dynamicS☆21May 13, 2025Updated last year
- Cytograph version used for adult human-brain analysis☆102Jun 5, 2026Updated 2 months ago
- Co-accessibility network from single-cell ATAC-seq data. Python code with AnnData, based on Cicero algorithm.☆35May 23, 2026Updated 2 months ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Gene regulatory network inference for RNA velocity and pseudotime data☆29Nov 6, 2025Updated 9 months ago
- Simple scVI implementation☆13Aug 10, 2026Updated last week
- Aligning gene expression trajectories of single-cell reference and query systems☆90Jul 28, 2026Updated 3 weeks ago
- ☆35Oct 4, 2024Updated last year
- Weakly supervised learning uncovers phenotypic signatures in single-cell data☆42Jun 7, 2026Updated 2 months ago
- Universal Single-Cell Genomics Preprocessing package☆51Jul 29, 2026Updated 2 weeks ago
- Snakemake workflow for comparing E-G links to experimental data☆25May 27, 2026Updated 2 months ago
- Learning motif contributions to cell transitions using sequence features and graphs.☆27Aug 30, 2024Updated last year
- Raw data and analysis of scRNA Seq experiments for the paper Multimodal Mapping of the Immune Landscape in Human Pancreatic Cancer. This …☆15Nov 30, 2020Updated 5 years ago
- End-to-end encrypted email - Proton Mail • AdSpecial offer: 40% Off Yearly / 80% Off First Month. All Proton services are open source and independently audited for security.
- Automated ingestion and conversion of various single-cell data formats, within and across species☆16Jan 26, 2026Updated 6 months ago
- Package for the analysis of Transcripts outside segmented cells in ST data☆31Aug 10, 2026Updated last week
- Scalable framework for integrating single-cell omics with genetic data using AnnData.☆21Updated this week
- Segmentation-free Analysis of In Situ Capture data☆14Jul 6, 2026Updated last month
- ☆18Updated this week
- Unsupervised Deep Disentangled Representation of Single-Cell Omics☆78Aug 10, 2026Updated last week
- DIALOGUE is a dimensionality reduction method that uses cross-cell-type associations to identify multicellular programs (MCPs) and map th…☆125Jan 22, 2024Updated 2 years ago