scDoRI (single-cell Deep multi-Omic Regulatory Inference) is a deep learning model to infer enhancer-mediated gene regulatory networks (eGRNs) from single-cell multiome data (RNA + ATAC).
☆39Aug 15, 2026Updated 2 months ago
Alternatives and similar repositories for scDORI
Users that are interested in scDORI are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- factor models for omics data☆49Updated this week
- ☆22Jun 12, 2026Updated 4 months ago
- Co-accessibility network from single-cell ATAC-seq data. Python code with AnnData, based on Cicero algorithm.☆36May 23, 2026Updated 4 months ago
- ☆10Jun 13, 2025Updated last year
- ☆18Feb 12, 2026Updated 8 months ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- Robust and scalable single-cell signature scoring☆29Updated this week
- CellWalkR: An R Package for integrating single-cell and bulk data to resolve regulatory elements☆23Oct 8, 2025Updated last year
- Functional Inference of Gene Regulation☆56Jul 5, 2024Updated 2 years ago
- Single-cell Analysis of Perturbational Effects using Machine Learning☆21Oct 9, 2025Updated last year
- Benchmark of GRNs using the GRETA pipeline☆33Jun 9, 2026Updated 4 months ago
- scooby: Modeling multi-modal genomic profiles from DNA sequence at single-cell resolution.☆70Aug 10, 2026Updated 2 months ago
- Multiome GRN inference.☆145Updated this week
- Sample representation benchmark for single-cell data☆15Jun 12, 2026Updated 4 months ago
- Simple scVI implementation☆13Updated this week
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- End-to-end analysis of spatial multi-omics data☆131Oct 4, 2026Updated last week
- Spatial transcriptomics foundation model based on Graph Transformer and JEPA☆74Aug 10, 2026Updated 2 months ago
- Pareto Task Inference in Python☆23Updated this week
- Perturbation-response Score (PS) analysis is a method to quantify diverse perturbation responses and discover novel biological insights i…☆19Apr 20, 2024Updated 2 years ago
- Context specific and dynamic gene regulatory network reconstruction and analysis☆135Aug 3, 2026Updated 2 months ago
- Code, data and analysis for moslin.☆15Oct 7, 2024Updated 2 years ago
- Snakemake workflow for comparing E-G links to experimental data☆25Sep 10, 2026Updated last month
- Robustness and applicability of transcription factor and pathway analysis tools on single-cell RNA-seq data☆30Mar 2, 2020Updated 6 years ago
- Aligning gene expression trajectories of single-cell reference and query systems☆94Updated this week
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Parse ArchR arrow files to anndata h5ad☆17Dec 14, 2023Updated 2 years ago
- Transformer models for predicting gene regulatory networks from omics data☆22Mar 4, 2026Updated 7 months ago
- ☆24Aug 17, 2026Updated 2 months ago
- Code for the analysis performed in the paper "Deep learning the cis-regulatory code of chromatin dynamics during cellular reprogramming" …☆18Oct 16, 2025Updated last year
- Functional and Learnable Cell dynamicS☆22May 13, 2025Updated last year
- ☆18Jan 30, 2026Updated 8 months ago
- Cytograph version used for adult human-brain analysis☆102Jun 5, 2026Updated 4 months ago
- Camiel's scATAC-seq analysis pipeline☆15Apr 15, 2024Updated 2 years ago
- ☆12Nov 20, 2023Updated 2 years ago
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- Unsupervised Deep Disentangled Representation of Single-Cell Omics☆83Updated this week
- ☆36Sep 7, 2026Updated last month
- Gene regulatory network inference for RNA velocity and pseudotime data☆29Nov 6, 2025Updated 11 months ago
- Weakly supervised learning uncovers phenotypic signatures in single-cell data☆42Jun 7, 2026Updated 4 months ago
- Universal Single-Cell Genomics Preprocessing package☆53Updated this week
- ☆36Oct 4, 2024Updated 2 years ago
- Learning motif contributions to cell transitions using sequence features and graphs.☆27Aug 30, 2024Updated 2 years ago