Alternatives and similar repositories for DGCA

Users that are interested in DGCA are comparing it to the libraries listed below

• saezlab / transcriptutorial
  This is a tutorial to guide the analysis of RNAseq dataset using footprint based tools such as DOROTHEA, PROGENY and CARNIVAL
  ☆55Updated 2 years ago
• reimandlab / ActivePathways
  Integrative pathway enrichment analysis of multivariate omics data
  ☆109Updated 9 months ago
• pachterlab / kallisto-transcriptome-indices
  Reference transcriptome indices build from kallisto for popular organisms
  ☆42Updated last year
• bvieth / scRNA-seq-pipelines
  Compendium to "A Systematic Evaluation of Single Cell RNA-Seq Analysis Pipelines"
  ☆54Updated 4 years ago
• abodein / timeOmics
  Time-Course Multi-Omics data integration
  ☆24Updated last year
• YosefLab / ImpulseDE2
  ☆38Updated 2 years ago
• NBISweden / workshop-RNAseq
  Workshop • Analysis of RNA-seq data
  ☆35Updated last year
• ratschlab / pancanatlas_code_public
  Public repository containing research code for the TCGA PanCanAtlas Splicing project
  ☆41Updated 4 years ago
• jianhong / trackViewer.documentation
  documentation for trackViewer
  ☆29Updated 5 years ago
• GangLiLab / genekitr
  🧬 Gene analysis toolkit based on R
  ☆57Updated 4 months ago
• ssayols / rrvgo
  Reduce + Visualize Gene Ontology
  ☆27Updated 3 weeks ago
• nuno-agostinho / psichomics
  Interactive R package to quantify, analyse and visualise alternative splicing
  ☆37Updated this week
• williamritchie / IRFinder
  Detecting intron retention from RNA-Seq experiments
  ☆55Updated 10 months ago
• sirselim / illumina450k_filtering
  A collection of resources to filter 'bad' probes from the Illumina 450k and EPIC methylation arrays
  ☆30Updated last year
• vivekbhr / Subread_to_DEXSeq
  Scripts to import your FeatureCounts output into DEXSeq
  ☆33Updated 6 years ago
• bartongroup / Proteus
  R package for analysing proteomics data
  ☆49Updated 2 years ago
• snystrom / memes
  An R interface to the MEME Suite
  ☆50Updated 7 months ago
• ucdavis-bioinformatics-training / 2017_2018-single-cell-RNA-sequencing-Workshop-UCD_UCB_UCSF
  2017_2018 single cell RNA sequencing Workshop UCD_UCB_UCSF
  ☆36Updated 6 years ago
• mdozmorov / RNA-seq_notes
  A continually expanding collection of RNA-seq tools
  ☆49Updated 7 months ago
• ncrna / PathogenTrack
  A pipeline to identify pathogenic microorganisms from scRNA-seq raw data.
  ☆27Updated last year
• wmacnair / SampleQC
  Robust, multivariate, multi-sample, multi-celltype QC for single cell RNA-seq data
  ☆37Updated 2 years ago
• NBISweden / workshop-epigenomics-RTDs
  workshop website on readthedocs
  ☆19Updated 3 weeks ago
• friedue / Notes
  Personal notes about work- and coding-related topics
  ☆20Updated 2 years ago
• waldronlab / HGNChelper
  Identify and correct invalid gene symbols
  ☆58Updated 6 months ago
• ThomasCarroll / ATAC_Workshop
  ATAC_seq Workshop
  ☆14Updated 7 years ago
• JEFworks / liger
  Lightweight Iterative Gene set Enrichment in R
  ☆56Updated 7 months ago
• BaderLab / Cytoscape_workflows
  collection of notebooks with different cytoscape workflows
  ☆49Updated 2 years ago
• songw01 / MEGENA
  Multiscale embedded gene co-expression network analysis
  ☆51Updated last year
• huangyh09 / brie
  BRIE: Bayesian Regression for Isoform Estimate in Single Cells
  ☆42Updated 11 months ago
• GuangchuangYu / enrichment4GTEx_clusterProfiler
  reproduce the functional enrichment analysis presented in GTEx paper using clusterProfiler/DOSE
  ☆33Updated 3 years ago