JocelynSong / SurfProLinks
☆33Updated 9 months ago
Alternatives and similar repositories for SurfPro
Users that are interested in SurfPro are comparing it to the libraries listed below
Sorting:
- Predicting mutational effects on protein-protein binding via a side-chain diffusion probabilistic model (NeurIPS 2023 Poster)☆37Updated 2 years ago
- ESM-GearNet for Protein Structure Representation Learning (https://arxiv.org/abs/2303.06275)☆111Updated 2 years ago
- Full-Atom Peptide Design based on Multi-modal Flow Matching (ICML 2024)☆97Updated 7 months ago
- Sequence-Structure-Surface Model for Protein Fitness Prediction (S3F)☆47Updated last year
- Reaction-Conditioned Virtual Screening of Enzymes☆40Updated 6 months ago
- ☆97Updated last year
- Codes for our paper "Full-Atom Peptide Design with Geometric Latent Diffusion" (NeurIPS 2024)☆100Updated 8 months ago
- [NeurIPS 2023] DrugCLIP: Contrastive Protein-Molecule Representation Learning for Virtual Screening☆119Updated last month
- ☆76Updated 10 months ago
- This repo contains the codes for our paper "End-to-End Full-Atom Antibody Design"☆122Updated 10 months ago
- ☆144Updated 4 months ago
- ☆39Updated 6 months ago
- Evaluating Protein Binding Interfaces with Transformer Networks☆46Updated 2 years ago
- Official repository of ReactZyme☆37Updated last year
- This repo contains the codes for our paper Conditional Antibody Design as 3D Equivariant Graph Translation.☆101Updated 2 years ago
- Codes for our paper "UniMoMo: Unified Generative Modeling of 3D Molecules for De Novo Binder Design" (ICML 2025)☆77Updated 2 weeks ago
- Official implementation of CP-Composer. It is the released code of 《Zero-Shot Cyclic Peptide Design via Composable Geometric Constraints》…☆21Updated 4 months ago
- 📈 Fusion of sequence, structure and feature information to improve protein solubility prediction (IEEE BIBM 2024).☆24Updated 7 months ago
- ☆108Updated 2 years ago
- ☆54Updated 6 months ago
- Official Implemetation of ConfDiff (ICML'24) - Protein Conformation Generation via Force-Guided SE(3) Diffusion Models☆71Updated last year
- Official implementation of Generative Diffusion Models for Antibody Design, Docking, and Optimization.☆60Updated 2 years ago
- Rotamer Density Estimator is an Unsupervised Learner of the Effect of Mutations on Protein-Protein Interaction (ICLR 2023)☆60Updated last year
- Towards Explainable Target-Aware Molecule Generation with Knowledge Guidance☆35Updated last year
- Sidechain conditioning and modeling for full-atom protein sequence design☆130Updated last month
- Learning Harmonic Molecular Representations on Riemannian Manifold, ICLR, 2023☆24Updated 2 years ago
- Implementation of NeurIPS24 paper "Generalized Protein Pocket Generation with Prior-Informed Flow Matching"☆19Updated 7 months ago
- Implementation of PocketXMol, the pocket-interacting molecular generative foundation model.☆99Updated 3 weeks ago
- [ICLR 2024] Protein-Ligand Interaction Prior for Binding-aware 3D Molecule Diffusion Models☆53Updated last year
- Code implementation of "Diffusion probabilistic modeling of protein backbones in 3D for the motif-scaffolding problem" https://arxiv.org/…☆73Updated 2 years ago