Alternatives and similar repositories for SurfPro

Users that are interested in SurfPro are comparing it to the libraries listed below

• DeepGraphLearning / S3F
  Sequence-Structure-Surface Model for Protein Fitness Prediction (S3F)
  ☆47Updated last year
• DeepGraphLearning / ESM-GearNet
  ESM-GearNet for Protein Structure Representation Learning (https://arxiv.org/abs/2303.06275)
  ☆111Updated 2 years ago
• TianZhuAI4S / DiffAffinity
  Predicting mutational effects on protein-protein binding via a side-chain diffusion probabilistic model (NeurIPS 2023 Poster)
  ☆37Updated 2 years ago
• pgmikhael / clipzyme
  Reaction-Conditioned Virtual Screening of Enzymes
  ☆40Updated 7 months ago
• wengong-jin / DSMBind
  ☆97Updated last year
• THUNLP-MT / PepGLAD
  Codes for our paper "Full-Atom Peptide Design with Geometric Latent Diffusion" (NeurIPS 2024)
  ☆104Updated 9 months ago
• pengxingang / PocketXMol
  Implementation of PocketXMol, the pocket-interacting molecular generative foundation model.
  ☆102Updated 2 weeks ago
• kxz18 / UniMoMo
  Codes for our paper "UniMoMo: Unified Generative Modeling of 3D Molecules for De Novo Binder Design" (ICML 2025)
  ☆78Updated last month
• zhengkangjie / ESM-AA
  ☆77Updated 11 months ago
• Ced3-han / PepFlowww
  Full-Atom Peptide Design based on Multi-modal Flow Matching (ICML 2024)
  ☆100Updated 7 months ago
• stebliankin / piston
  Evaluating Protein Binding Interfaces with Transformer Networks
  ☆46Updated 2 years ago
• THUNLP-MT / dyMEAN
  This repo contains the codes for our paper "End-to-End Full-Atom Antibody Design"
  ☆124Updated 10 months ago
• bytedance / apm
  ☆55Updated 7 months ago
• guaguabujianle / EHIGN_PLA
  ☆21Updated last year
• peizhenbai / MapDiff
  Implementation of MapDiff: "Mask-prior-guided denoising diffusion improves inverse protein folding" in PyTorch
  ☆42Updated 6 months ago
• LeiLiLab / EnzyGen
  ☆39Updated 7 months ago
• zaixizhang / PocketFlow
  Implementation of NeurIPS24 paper "Generalized Protein Pocket Generation with Prior-Informed Flow Matching"
  ☆19Updated 8 months ago
• Layne-Huang / PMDM
  ☆145Updated 5 months ago
• YangLing0818 / IPDiff
  [ICLR 2024] Protein-Ligand Interaction Prior for Binding-aware 3D Molecule Diffusion Models
  ☆53Updated last year
• WillHua127 / ReactZyme
  Official repository of ReactZyme
  ☆37Updated last year
• bytedance / ConfDiff
  Official Implemetation of ConfDiff (ICML'24) - Protein Conformation Generation via Force-Guided SE(3) Diffusion Models
  ☆72Updated last year
• CMACH508 / KGDiff
  Towards Explainable Target-Aware Molecule Generation with Knowledge Guidance
  ☆35Updated last year
• zaixizhang / Awesome-SBDD
  Papers about Structure-based Drug Design (SBDD)
  ☆138Updated 4 months ago
• huankoh / PSICHIC
  PSICHIC (pronounced Psychic) - PhySIcoCHemICal graph neural network for learning protein-ligand interaction fingerprints from sequence da…
  ☆123Updated last month
• THUNLP-MT / MEAN
  This repo contains the codes for our paper Conditional Antibody Design as 3D Equivariant Graph Translation.
  ☆101Updated 2 years ago
• zhouxiangxin1998 / DualDiff
  ☆16Updated last year
• jdp22 / CP-Composer_final
  Official implementation of CP-Composer. It is the released code of 《Zero-Shot Cyclic Peptide Design via Composable Geometric Constraints》…
  ☆21Updated 5 months ago
• kad-ecoli / mmCIF2BioLiP
  BioLiP2 database curation and web interface
  ☆28Updated 6 months ago
• tyang816 / ProtSolM
  📈 Fusion of sequence, structure and feature information to improve protein solubility prediction (IEEE BIBM 2024).
  ☆23Updated 7 months ago
• jiaxianyan / DeltaDock
  ☆27Updated last year