Code for paper: "Fine-Tuning Discrete Diffusion Models via Reward Optimization with Applications to DNA and Protein Design"
☆70May 10, 2025Updated last year
Alternatives and similar repositories for DRAKES
Users that are interested in DRAKES are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Derivative-Free Guidance in Diffusion Models with Soft Value-Based Decoding. For controlled generation in DNA, RNA, proteins, molecules (…☆39Jan 7, 2026Updated 4 months ago
- Repository for Fast Non-autoregressive Inverse Folding with Discrete Diffusion☆18Feb 8, 2024Updated 2 years ago
- ☆15Mar 28, 2025Updated last year
- Proteina is a new large-scale flow-based protein backbone generator that utilizes hierarchical fold class labels for conditioning and rel…☆262Jul 24, 2025Updated 10 months ago
- Codes for our paper "UniMoMo: Unified Generative Modeling of 3D Molecules for De Novo Binder Design" (ICML 2025)☆94Dec 7, 2025Updated 5 months ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- SEIKO is a novel reinforcement learning method to efficiently fine-tune diffusion models in an online setting. Our methods outperform all…☆30Jul 18, 2024Updated last year
- ☆224Mar 2, 2024Updated 2 years ago
- The Family of Diffusion Protein Language Models (DPLM)☆334Jul 25, 2025Updated 10 months ago
- Explore protein fold space with deep generative models☆16Aug 5, 2024Updated last year
- ☆23Nov 6, 2024Updated last year
- ☆25Mar 20, 2025Updated last year
- [ICML2025] The official implementation of "PolyConf: Unlocking Polymer Conformation Generation through Hierarchical Generative Models"☆35Mar 18, 2026Updated 2 months ago
- ☆138Jun 3, 2025Updated 11 months ago
- Sidechain conditioning and modeling for full-atom protein sequence design☆138Nov 11, 2025Updated 6 months ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- Dirichlet Diffusion Score Model for Biological Sequence Generation.☆65Feb 12, 2025Updated last year
- ☆10Apr 1, 2024Updated 2 years ago
- Official implementation of NeurIPS'24 paper "Bridge-IF: Learning Inverse Protein Folding with Markov Bridges"☆18Mar 16, 2025Updated last year
- Structure-conditioned masked language modeling for protein sequence design☆74Jan 31, 2024Updated 2 years ago
- Equivariant layers for RC-complement symmetry in DNA sequence data☆12Feb 24, 2022Updated 4 years ago
- ☆138May 7, 2024Updated 2 years ago
- protein backbone refinement☆15Sep 12, 2024Updated last year
- Utility scripts to generate and evaluate parametrically guided beta barrel protein backbone structures.☆14Nov 14, 2025Updated 6 months ago
- Joint sequence and structure generation with RoseTTAFold sequence space diffusion☆334Oct 28, 2024Updated last year
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Highly informative TCR representation model☆16Nov 26, 2025Updated 6 months ago
- Aligning protein generative models with experimental fitness☆121Mar 12, 2026Updated 2 months ago
- Codebase of paper "Structure Language Models for Protein Conformation Generation" (ICLR'25)☆80Feb 24, 2025Updated last year
- RiboNN: predicting translation efficiencies from mRNA sequences