Code for paper: "Fine-Tuning Discrete Diffusion Models via Reward Optimization with Applications to DNA and Protein Design"
☆71May 10, 2025Updated last year
Alternatives and similar repositories for DRAKES
Users that are interested in DRAKES are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Derivative-Free Guidance in Diffusion Models with Soft Value-Based Decoding. For controlled generation in DNA, RNA, proteins, molecules (…☆39Jan 7, 2026Updated 5 months ago
- Repository for Fast Non-autoregressive Inverse Folding with Discrete Diffusion☆18Feb 8, 2024Updated 2 years ago
- ☆15Mar 28, 2025Updated last year
- Proteina is a new large-scale flow-based protein backbone generator that utilizes hierarchical fold class labels for conditioning and rel…☆264Jul 24, 2025Updated 10 months ago
- Codes for our paper "UniMoMo: Unified Generative Modeling of 3D Molecules for De Novo Binder Design" (ICML 2025)☆95Dec 7, 2025Updated 6 months ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- SEIKO is a novel reinforcement learning method to efficiently fine-tune diffusion models in an online setting. Our methods outperform all…☆30Jul 18, 2024Updated last year
- ☆230Mar 2, 2024Updated 2 years ago
- The Family of Diffusion Protein Language Models (DPLM)☆336Jul 25, 2025Updated 10 months ago
- Explore protein fold space with deep generative models☆16Aug 5, 2024Updated last year
- ☆22Nov 6, 2024Updated last year
- ☆25Mar 20, 2025Updated last year
- [ICML2025] The official implementation of "PolyConf: Unlocking Polymer Conformation Generation through Hierarchical Generative Models"☆35Mar 18, 2026Updated 3 months ago
- ☆139Jun 3, 2025Updated last year
- Sidechain conditioning and modeling for full-atom protein sequence design☆140Nov 11, 2025Updated 7 months ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Dirichlet Diffusion Score Model for Biological Sequence Generation.☆65Feb 12, 2025Updated last year
- ☆10Apr 1, 2024Updated 2 years ago
- Official implementation of NeurIPS'24 paper "Bridge-IF: Learning Inverse Protein Folding with Markov Bridges"☆18Mar 16, 2025Updated last year
- Structure-conditioned masked language modeling for protein sequence design☆74Jan 31, 2024Updated 2 years ago
- Equivariant layers for RC-complement symmetry in DNA sequence data☆13Feb 24, 2022Updated 4 years ago
- ☆138May 7, 2024Updated 2 years ago
- protein backbone refinement☆15Sep 12, 2024Updated last year
- Utility scripts to generate and evaluate parametrically guided beta barrel protein backbone structures.☆13Nov 14, 2025Updated 7 months ago
- Joint sequence and structure generation with RoseTTAFold sequence space diffusion☆332Oct 28, 2024Updated last year
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Highly informative TCR representation model☆16Nov 26, 2025Updated 6 months ago
- Aligning protein generative models with experimental fitness☆122Mar 12, 2026Updated 3 months ago
- Codebase of paper "Structure Language Models for Protein Conformation Generation" (ICLR'25)☆80May 27, 2026Updated 3 weeks ago
- RiboNN: predicting translation efficiencies from mRNA sequences☆59Jan 12, 2026Updated 5 months ago
- Conditioning diffusion models for scaffolding protein motifs. A repository for my master's dissertation.☆12Dec 10, 2024Updated last year
- ☆37Mar 19, 2025Updated last year
- HalluDesign, a hallucination-driven all-atom framework for the iterative co-optimization and co-design of protein sequences and structure…☆81Updated this week
- [NeurIPS 2024] Simple and Effective Masked Diffusion Language Model☆696Sep 29, 2025Updated 8 months ago
- ☆32Feb 5, 2025Updated last year
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- random colab notebooks for biology☆26Aug 23, 2025Updated 9 months ago
- A Score-Only Adaptation of AlphaFold3 for Biomolecular Structure Evaluation☆127Jan 28, 2026Updated 4 months ago
- Orthrus is a mature RNA model for RNA property prediction. It uses a mamba encoder backbone, a variant of state-space models specifical…☆125Dec 10, 2025Updated 6 months ago
- Official code release for Ambient Protein Diffusion☆35Aug 30, 2025Updated 9 months ago
- Source code for RNA-FrameFlow: SE(3) Flow Matching for 3D RNA Backbone Design☆100Oct 15, 2025Updated 8 months ago
- Python package for P2 (Path Planning), a masked diffusion model sampling method for sequence generation (protein, text, etc.).☆23Aug 19, 2025Updated 10 months ago
- The official implementation of the NeurIPS'23 paper ProteinInvBench: Benchmarking Protein Design on Diverse Tasks, Models, and Metrics☆202Sep 18, 2024Updated last year