ChenyuWang-Monica / DRAKESLinks
Code for paper: "Fine-Tuning Discrete Diffusion Models via Reward Optimization with Applications to DNA and Protein Design"
☆54Updated last month
Alternatives and similar repositories for DRAKES
Users that are interested in DRAKES are comparing it to the libraries listed below
Sorting:
- Code for the paper https://arxiv.org/abs/2402.04997☆78Updated last year
- ☆115Updated last year
- ☆12Updated last year
- Dirichlet Diffusion Score Model for Biological Sequence Generation.☆53Updated 4 months ago
- RNAFlow: RNA Structure & Sequence Design via Inverse Folding-Based Flow Matching☆62Updated 10 months ago
- Code for our paper "Unlocking Guidance for Discrete State-Space Diffusion and Flow Models"☆20Updated 2 months ago
- Code for the paper Context-Guided Diffusion for Out-of-Distribution Molecular and Protein Design☆39Updated 11 months ago
- Derivative-Free Guidance in Diffusion Models with Soft Value-Based Decoding. For controlled generation in DNA, RNA, proteins, molecules (…☆32Updated 8 months ago
- ☆175Updated last year
- This repo contains the codes for our paper Conditional Antibody Design as 3D Equivariant Graph Translation.☆95Updated 2 years ago
- Codebase of paper "Structure Language Models for Protein Conformation Generation" (ICLR'25)☆58Updated 4 months ago
- ☆41Updated 3 months ago
- diffusion model for protein sequence generation☆50Updated 2 years ago
- Graph Denoising Diffusion for Inverse Protein Folding(NeurIPS 2023)☆63Updated 11 months ago
- Official implementation of "Learning the language of protein structures"☆33Updated this week
- Simple Guidance Mechanisms for Discrete Diffusion Models☆43Updated 6 months ago
- [ICLR 2024 Spotlight] The official repo for the paper "De novo Protein Design using Geometric Vector Field Networks".☆30Updated 10 months ago
- NeurIPS 2023 Spotlight paper: Full atom protein pocket design via iterative refinement☆48Updated last year
- A comprehensive benchmark on the performances of multiple protein backbone generative models.☆61Updated last month
- ☆22Updated last week
- Joint Sequence-Structure Generation of Nucleic Acid and Protein Complexes with SE(3)-Discrete Diffusion☆58Updated last year
- Official Implemetation of ConfDiff (ICML'24) - Protein Conformation Generation via Force-Guided SE(3) Diffusion Models☆60Updated 9 months ago
- Code for Pre-training Protein Encoder via Siamese Sequence-Structure Diffusion Trajectory Prediction (https://arxiv.org/abs/2301.12068)☆40Updated last year
- A standardized protein design benchmark for motif-scaffolding problems☆61Updated last month
- Residue Level Alignment☆18Updated 7 months ago
- In-silico design pipeline for evaluating protein structure diffusion models.☆26Updated last year
- Source code of PETA: Evaluating the Impact of Protein Transfer Learning with Sub-word Tokenization on Downstream Applications.☆32Updated last month
- Full-Atom Peptide Design based on Multi-modal Flow Matching (ICML 2024)☆82Updated last month
- ☆10Updated last year
- Implementation of the DDPM + IPA (invariant point attention) for protein generation, as outlined in the paper "Protein Structure and Sequ…☆89Updated 2 years ago