ChenyuWang-Monica / DRAKESLinks
Code for paper: "Fine-Tuning Discrete Diffusion Models via Reward Optimization with Applications to DNA and Protein Design"
☆64Updated 8 months ago
Alternatives and similar repositories for DRAKES
Users that are interested in DRAKES are comparing it to the libraries listed below
Sorting:
- Code for our paper "Unlocking Guidance for Discrete State-Space Diffusion and Flow Models"☆31Updated 8 months ago
- Code for the paper https://arxiv.org/abs/2402.04997☆102Updated last year
- Dirichlet Diffusion Score Model for Biological Sequence Generation.☆63Updated 11 months ago
- RNAFlow: RNA Structure & Sequence Design via Inverse Folding-Based Flow Matching☆79Updated last year
- Graph Denoising Diffusion for Inverse Protein Folding(NeurIPS 2023)☆69Updated last year
- Evolutionary Algorithm with Diffusion Models for Protein Design☆30Updated last week
- ☆129Updated last year
- Official implementation of "Learning the language of protein structures"☆41Updated 6 months ago
- Python package for P2 (Path Planning), a masked diffusion model sampling method for sequence generation (protein, text, etc.).☆21Updated 4 months ago
- diffusion model for protein sequence generation☆50Updated 2 years ago
- In-silico design pipeline for evaluating protein structure diffusion models.☆28Updated last year
- ☆207Updated last year
- ☆54Updated 5 months ago
- ☆12Updated last year
- Code for the paper Context-Guided Diffusion for Out-of-Distribution Molecular and Protein Design☆39Updated last year
- Derivative-Free Guidance in Diffusion Models with Soft Value-Based Decoding. For controlled generation in DNA, RNA, proteins, molecules (…☆36Updated last week
- This repo contains the codes for our paper Conditional Antibody Design as 3D Equivariant Graph Translation.☆101Updated 2 years ago
- Joint Sequence-Structure Generation of Nucleic Acid and Protein Complexes with SE(3)-Discrete Diffusion☆58Updated last year
- Source code of the paper "Protein Sequence and Structure Co-Design with Equivariant Translation"☆24Updated 2 years ago
- Aligned Diffusion Schroedinger Bridges (UAI 2023)☆33Updated 2 years ago
- A Novel Approach for Protein Sequence Design Based on Secondary Strucure☆23Updated 10 months ago
- A comprehensive benchmark on the performances of multiple protein backbone generative models.☆65Updated 7 months ago
- Code for Pre-training Protein Encoder via Siamese Sequence-Structure Diffusion Trajectory Prediction (https://arxiv.org/abs/2301.12068)☆42Updated 2 years ago
- A benchmark for comprehensive evaluation on protein structure tokenization methods☆39Updated 5 months ago
- Implementation of the DDPM + IPA (invariant point attention) for protein generation, as outlined in the paper "Protein Structure and Sequ…☆89Updated 3 years ago
- Practically and asymptotically accurate conditional sampling from diffusion generative models without conditional training☆46Updated last year
- Codebase of paper "Structure Language Models for Protein Conformation Generation" (ICLR'25)☆73Updated 10 months ago
- This repository is the official implementation of Bidirectional Learning for Offline Infinite-width Model-based Optimization (NeurIPS 202…☆14Updated 2 years ago
- PEER Benchmark, appear at NeurIPS 2022 Dataset and Benchmark Track (https://arxiv.org/abs/2206.02096)☆99Updated 2 years ago
- The official code for "TaxDiff: Taxonomic-Guided Diffusion Model for Protein Sequence Generation"☆74Updated last year