Alternatives and similar repositories for DRAKES

Users that are interested in DRAKES are comparing it to the libraries listed below

• andrew-cr / discrete_flow_models
  Code for the paper https://arxiv.org/abs/2402.04997
  ☆96Updated last year
• hnisonoff / discrete_guidance
  Code for our paper "Unlocking Guidance for Discrete State-Space Diffusion and Flow Models"
  ☆29Updated 5 months ago
• jasonkyuyim / multiflow
  ☆198Updated last year
• pengzhangzhi / Path-Planning
  Python package for P2 (Path Planning), a masked diffusion model sampling method for sequence generation (protein, text, etc.).
  ☆18Updated last month
• jzhoulab / ddsm
  Dirichlet Diffusion Score Model for Biological Sequence Generation.
  ☆62Updated 7 months ago
• HannesStark / dirichlet-flow-matching
  ☆123Updated last year
• ykiiiiii / GraDe_IF
  Graph Denoising Diffusion for Inverse Protein Folding(NeurIPS 2023)
  ☆67Updated last year
• divnori / rnaflow
  RNAFlow: RNA Structure & Sequence Design via Inverse Folding-Based Flow Matching
  ☆69Updated last year
• masa-ue / ProDifEvo-Refinement
  Evolutionary Algorithm with Diffusion Models for Protein Design
  ☆27Updated 7 months ago
• NVlabs / protcomposer
  ☆46Updated 2 months ago
• leojklarner / context-guided-diffusion
  Code for the paper Context-Guided Diffusion for Out-of-Distribution Molecular and Protein Design
  ☆39Updated last year
• pengzhangzhi / protein-sequence-diffusion-model
  diffusion model for protein sequence generation
  ☆50Updated 2 years ago
• instadeepai / protein-structure-tokenizer
  Official implementation of "Learning the language of protein structures"
  ☆39Updated 3 months ago
• ujk21 / dyn-informed
  ☆12Updated last year
• THUNLP-MT / MEAN
  This repo contains the codes for our paper Conditional Antibody Design as 3D Equivariant Graph Translation.
  ☆96Updated 2 years ago
• zaixizhang / FAIR
  NeurIPS 2023 Spotlight paper: Full atom protein pocket design via iterative refinement
  ☆47Updated last year
• FanmengWang / WGFormer
  [ICML2025] The official implementation of "WGFormer: An SE(3)-Transformer Driven by Wasserstein Gradient Flows for Molecular Ground-State…
  ☆30Updated 4 months ago
• masa-ue / SVDD
  Derivative-Free Guidance in Diffusion Models with Soft Value-Based Decoding. For controlled generation in DNA, RNA, proteins, molecules (…
  ☆33Updated last year
• ngruver / NOS
  Protein Design with Guided Discrete Diffusion
  ☆134Updated last year
• lujiarui / esmdiff
  Codebase of paper "Structure Language Models for Protein Conformation Generation" (ICLR'25)
  ☆64Updated 7 months ago
• Profluent-Internships / MMDiff
  Joint Sequence-Structure Generation of Nucleic Acid and Protein Complexes with SE(3)-Discrete Diffusion
  ☆58Updated last year
• lucidrains / ddpm-ipa-protein-generation
  Implementation of the DDPM + IPA (invariant point attention) for protein generation, as outlined in the paper "Protein Structure and Sequ…
  ☆89Updated 3 years ago
• Ced3-han / PepFlowww
  Full-Atom Peptide Design based on Multi-modal Flow Matching (ICML 2024)
  ☆91Updated 4 months ago
• aqlaboratory / insilico_design_pipeline
  In-silico design pipeline for evaluating protein structure diffusion models.
  ☆27Updated last year
• DeepGraphLearning / PEER_Benchmark
  PEER Benchmark, appear at NeurIPS 2022 Dataset and Benchmark Track (https://arxiv.org/abs/2206.02096)
  ☆95Updated 2 years ago
• kuleshov-group / discrete-diffusion-guidance
  Simple Guidance Mechanisms for Discrete Diffusion Models
  ☆52Updated 9 months ago
• Genentech / walk-jump
  Official repository for discrete Walk-Jump Sampling (dWJS)
  ☆53Updated last year
• bytedance / ConfDiff
  Official Implemetation of ConfDiff (ICML'24) - Protein Conformation Generation via Force-Guided SE(3) Diffusion Models
  ☆66Updated last year
• aim-uofa / VFN
  [ICLR 2024 Spotlight] The official repo for the paper "De novo Protein Design using Geometric Vector Field Networks".
  ☆30Updated last year
• dqwang122 / EATLM
  Code for 'On Pre-trained Language Models For Antibody'
  ☆32Updated 2 years ago