ChenyuWang-Monica / DRAKESLinks
Code for paper: "Fine-Tuning Discrete Diffusion Models via Reward Optimization with Applications to DNA and Protein Design"
☆57Updated 2 months ago
Alternatives and similar repositories for DRAKES
Users that are interested in DRAKES are comparing it to the libraries listed below
Sorting:
- Code for the paper https://arxiv.org/abs/2402.04997☆88Updated last year
- Dirichlet Diffusion Score Model for Biological Sequence Generation.☆55Updated 5 months ago
- ☆45Updated 2 weeks ago
- ☆118Updated last year
- Code for the paper Context-Guided Diffusion for Out-of-Distribution Molecular and Protein Design☆39Updated last year
- Code for our paper "Unlocking Guidance for Discrete State-Space Diffusion and Flow Models"☆22Updated 3 months ago
- ☆189Updated last year
- ☆12Updated last year
- Graph Denoising Diffusion for Inverse Protein Folding(NeurIPS 2023)☆66Updated last year
- This repo contains the codes for our paper Conditional Antibody Design as 3D Equivariant Graph Translation.☆96Updated 2 years ago
- diffusion model for protein sequence generation☆50Updated 2 years ago
- RNAFlow: RNA Structure & Sequence Design via Inverse Folding-Based Flow Matching☆65Updated 11 months ago
- [ICML2025] The official implementation of "PolyConf: Unlocking Polymer Conformation Generation through Hierarchical Generative Models"☆20Updated 2 months ago
- NeurIPS 2023 Spotlight paper: Full atom protein pocket design via iterative refinement☆47Updated last year
- Official implementation of "Learning the language of protein structures"☆37Updated last month
- Implementation of the DDPM + IPA (invariant point attention) for protein generation, as outlined in the paper "Protein Structure and Sequ…☆89Updated 3 years ago
- In-silico design pipeline for evaluating protein structure diffusion models.☆27Updated last year
- Official repository for discrete Walk-Jump Sampling (dWJS)☆53Updated last year
- Code for Pre-training Protein Encoder via Siamese Sequence-Structure Diffusion Trajectory Prediction (https://arxiv.org/abs/2301.12068)☆41Updated 2 years ago
- Source code of the paper "Protein Sequence and Structure Co-Design with Equivariant Translation"☆24Updated last year
- This is the official implementation for Equivariant Enengy-guided SDE for Inverse Molecule Design (ICLR 2023)☆48Updated last year
- Codebase of paper "Structure Language Models for Protein Conformation Generation" (ICLR'25)☆59Updated 5 months ago
- Joint Sequence-Structure Generation of Nucleic Acid and Protein Complexes with SE(3)-Discrete Diffusion☆58Updated last year
- PEER Benchmark, appear at NeurIPS 2022 Dataset and Benchmark Track (https://arxiv.org/abs/2206.02096)☆92Updated 2 years ago
- Protein Design with Guided Discrete Diffusion☆132Updated last year
- Evolutionary Algorithm with Diffusion Models for Protein Design☆24Updated 5 months ago
- Practically and asymptotically accurate conditional sampling from diffusion generative models without conditional training☆46Updated 8 months ago
- Aligned Diffusion Schroedinger Bridges (UAI 2023)☆32Updated last year
- A comprehensive benchmark on the performances of multiple protein backbone generative models.☆62Updated 2 months ago
- Code implementation of "Diffusion probabilistic modeling of protein backbones in 3D for the motif-scaffolding problem" https://arxiv.org/…☆75Updated last year