aws-samples / lm-gvp
LM-GVP: A Generalizable Deep Learning Framework for Protein Property Prediction from Sequence and Structure
☆51Updated 10 months ago
Alternatives and similar repositories for lm-gvp:
Users that are interested in lm-gvp are comparing it to the libraries listed below
- A collection of tasks to probe the effectiveness of protein sequence representations in modeling aspects of protein design☆96Updated 4 months ago
- Learning to design protein-protein interactions with enhanced generalization (ICLR 2024)☆47Updated 2 weeks ago
- open source repository☆131Updated last year
- Official code repository for the paper "ProteinNPT: Improving Protein Property Prediction and Design with Non-Parametric Transformers"☆97Updated last month
- Official implementation of Generative Diffusion Models for Antibody Design, Docking, and Optimization.☆54Updated last year
- Antibody-Antigen Docking and Affinity Benchmark☆68Updated 4 years ago
- ☆105Updated last year
- Official repository of EnzymeFlow☆74Updated last month
- This repo contains the codes for our paper "End-to-End Full-Atom Antibody Design"☆99Updated 9 months ago
- Fitness landscapes for antibodies☆59Updated 2 weeks ago
- ☆80Updated 3 months ago
- Structure-conditioned masked language modeling for protein sequence design☆61Updated 11 months ago
- This repository implements Gibbs sampling with Graph-based Smoothing☆36Updated 8 months ago
- ☆126Updated 2 years ago
- Geometric deep learning method to predict protein binding interfaces from a protein structure.☆118Updated last year
- The official implementation of DiffAbXL benchmarked in the paper "Exploring Log-Likelihood Scores for Ranking Antibody Sequence Designs",…☆63Updated 3 months ago
- MaSIF-neosurf: surface-based protein design for ternary complexes.☆73Updated 2 weeks ago
- Flexible Protein-Protein Docking with a Multi-Track Iterative Transformer.☆87Updated 6 months ago
- ☆58Updated 3 years ago
- The Enhanced Database of Interacting Protein Structures for Interface Prediction☆48Updated last year
- Code for "Protein Docking Model Evaluation by Graph Neural Networks"☆59Updated last year
- ☆97Updated 2 years ago
- An unofficial re-implementation of AntiBERTy, an antibody-specific protein language model, in PyTorch.☆24Updated 10 months ago
- Bioinformatics'2022 PerceiverCPI: A nested cross-attention network for compound-protein interaction prediction☆36Updated last year
- Predicting protein-ligand binding sites using deep convolutional neural network☆47Updated 4 months ago
- ☆73Updated 3 months ago
- Dataset and package for working with protein-protein interactions in 3D☆88Updated last month
- Graphinity: Equivariant Graph Neural Network Architecture for Predicting Change in Antibody-Antigen Binding Affinity☆26Updated 3 weeks ago
- GraphSite: protein-DNA binding site prediction using graph transformer and predicted protein structures☆60Updated 5 months ago
- Learning Structure-based Pocket Representations for Protein-Ligand Interaction Prediction☆30Updated last year