Computer aided proximal decaging as a universal strategy for temporal protein activation
☆28May 26, 2025Updated last year
Alternatives and similar repositories for CAGE-Prox
Users that are interested in CAGE-Prox are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆11Mar 28, 2024Updated 2 years ago
- ☆158Jul 28, 2026Updated 2 weeks ago
- For the purpose of post progressing of MD carried by gromacs☆24Jul 2, 2025Updated last year
- ☆184Oct 27, 2021Updated 4 years ago
- Modeling the effects of mutations in proteins using PyRosetta☆27Jan 26, 2018Updated 8 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- DDGScan: an integrated parallel workflow for the in silico point mutation scan of protein☆51Mar 21, 2024Updated 2 years ago
- ☆18Mar 13, 2024Updated 2 years ago
- pdbx is a parser module in python for structures of the protein data bank in the mmcif format☆31Aug 9, 2024Updated 2 years ago
- Some Rosetta Scripts that allow for various simple tasks☆15Jan 27, 2020Updated 6 years ago
- Using Rotamer Interaction Fields from RIFGen/Dock in python☆17May 2, 2021Updated 5 years ago
- MpbPPI: A multi-task pre-training-based equivariant approach for the prediction of the effect of amino acid mutations on protein-protein …☆18Oct 6, 2024Updated last year
- ☆22Jul 14, 2023Updated 3 years ago
- Python utilities for handling Rosetta output and PDB files☆16Sep 26, 2011Updated 14 years ago
- Universal framework for physically based computational protein design☆36Aug 19, 2023Updated 2 years ago
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- OPUS-TASS: A Protein Backbone Torsion Angles and Secondary Structure Predictor Based on Ensemble Neural Networks☆10Jul 9, 2020Updated 6 years ago
- Python Toolbox For Rosetta Silent Files Processing☆10Aug 2, 2021Updated 5 years ago
- ☆95Nov 25, 2025Updated 8 months ago
- Code for our paper "Protein sequence design with a learned potential"☆81Sep 8, 2023Updated 2 years ago
- pymol implementation of WaterDock with Akshay Sridhar (@akshay-sridhar) and refactoring work by Patrick McCubbin (@mccubbinp)☆11Mar 25, 2024Updated 2 years ago
- scripts and facilities for in-silico mutagenesis with FoldX☆70Mar 9, 2026Updated 5 months ago
- DeepSoluE☆18Sep 18, 2023Updated 2 years ago
- ☆13Sep 29, 2023Updated 2 years ago
- DLPacker☆32Aug 26, 2024Updated last year
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- predict stability change upon mutation☆32Jun 28, 2024Updated 2 years ago
- Pipeline for Nanopore sequencing: demultiplexing, variant calling, and quality visualization with error handling.☆12May 10, 2026Updated 3 months ago
- Code of our JC paper: "Structure-aware protein solubility prediction from sequence through graph convolutional network and predicted cont…☆77Mar 1, 2022Updated 4 years ago
- Source code for the BUDE Alanine Scan web application.☆15May 27, 2025Updated last year
- VenusFSFP: Few-Shot Protein Fitness Prediction☆119Nov 18, 2025Updated 8 months ago
- RosettaDesign using PyRosetta☆33Aug 22, 2019Updated 6 years ago
- Structure-based self-supervised learning enables ultrafast prediction of stability changes upon mutations