Computer aided proximal decaging as a universal strategy for temporal protein activation
☆28May 26, 2025Updated 9 months ago
Alternatives and similar repositories for CAGE-Prox
Users that are interested in CAGE-Prox are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆11Mar 28, 2024Updated last year
- ☆145Aug 17, 2022Updated 3 years ago
- For the purpose of post progressing of MD carried by gromacs☆23Jul 2, 2025Updated 8 months ago
- ☆183Oct 27, 2021Updated 4 years ago
- Modeling the effects of mutations in proteins using PyRosetta☆27Jan 26, 2018Updated 8 years ago
- DDGScan: an integrated parallel workflow for the in silico point mutation scan of protein☆49Mar 21, 2024Updated 2 years ago
- Python utilities for handling Rosetta output and PDB files☆16Sep 26, 2011Updated 14 years ago
- ☆18Mar 13, 2024Updated 2 years ago
- Some Rosetta Scripts that allow for various simple tasks☆15Jan 27, 2020Updated 6 years ago
- pdbx is a parser module in python for structures of the protein data bank in the mmcif format☆30Aug 9, 2024Updated last year
- ☆23Jul 14, 2023Updated 2 years ago
- Using Rotamer Interaction Fields from RIFGen/Dock in python☆17May 2, 2021Updated 4 years ago
- Universal framework for physically based computational protein design☆37Aug 19, 2023Updated 2 years ago
- OPUS-TASS: A Protein Backbone Torsion Angles and Secondary Structure Predictor Based on Ensemble Neural Networks☆10Jul 9, 2020Updated 5 years ago
- MpbPPI: A multi-task pre-training-based equivariant approach for the prediction of the effect of amino acid mutations on protein-protein …☆18Oct 6, 2024Updated last year
- Python Toolbox For Rosetta Silent Files Processing☆10Aug 2, 2021Updated 4 years ago
- ☆85Nov 25, 2025Updated 4 months ago
- Code for our paper "Protein sequence design with a learned potential"☆82Sep 8, 2023Updated 2 years ago
- scripts and facilities for in-silico mutagenesis with FoldX☆67Mar 9, 2026Updated 2 weeks ago
- Pipeline for Nanopore sequencing: demultiplexing, variant calling, and quality visualization with error handling.☆11Jan 25, 2026Updated 2 months ago
- pymol implementation of WaterDock with Akshay Sridhar (@akshay-sridhar) and refactoring work by Patrick McCubbin (@mccubbinp)☆11Mar 25, 2024Updated 2 years ago
- ☆13Sep 29, 2023Updated 2 years ago
- DLPacker☆32Aug 26, 2024Updated last year
- predict stability change upon mutation☆30Jun 28, 2024Updated last year
- VenusFSFP: Few-Shot Protein Fitness Prediction☆110Nov 18, 2025Updated 4 months ago
- GATSol, an enhanced predictor of protein solubility through the synergy of 3D structure information and large language modeling☆18Sep 7, 2024Updated last year
- ☆32Feb 5, 2025Updated last year
- Code of our JC paper: "Structure-aware protein solubility prediction from sequence through graph convolutional network and predicted cont…☆76Mar 1, 2022Updated 4 years ago
- RosettaDesign using PyRosetta☆33Aug 22, 2019Updated 6 years ago
- Source code for the BUDE Alanine Scan web application.☆12May 27, 2025Updated 9 months ago
- Lightweight induced fit docking☆21May 22, 2023Updated 2 years ago
- Generates consistent PSSM and/or PDB files for protein-protein complexes☆20Jun 26, 2022Updated 3 years ago
- Some scripts that I keep using over and over.☆21Jul 5, 2025Updated 8 months ago
- Structure-based self-supervised learning enables ultrafast prediction of stability changes upon mutations☆99Dec 10, 2025Updated 3 months ago
- This repo contains the collection of codes to find designer interfacial mutations☆17Sep 4, 2023Updated 2 years ago
- Predicting the effect of mutations on protein stability using a simple orientational potential.☆19Jul 5, 2024Updated last year
- Code and data used in https://doi.org/10.1101/2021.08.01.454656☆54May 2, 2022Updated 3 years ago
- python simulation interface for molecular modeling. To cite this software publication: https://www.sciencedirect.com/science/article/pii/…☆13Aug 24, 2016Updated 9 years ago
- ThermoNet is a computational method for quantitative prediction of the impact of single-point mutations on protein thermodynamic stabilit…☆119Dec 20, 2023Updated 2 years ago