Alternatives and similar repositories for CAGE-Prox

Users that are interested in CAGE-Prox are comparing it to the libraries listed below

• LAnAlchemist / Pseudocycle_small_molecule_binder
  Small_molecule_binder_design_use_pseudocycles
  ☆22Updated last year
• ohuelab / ColabFold-cycpep-dock
  Making Protein folding accessible to all!
  ☆24Updated last year
• brianjimenez / pydock_tutorial
  PyDock Tutorial
  ☆35Updated 7 years ago
• JinyuanSun / DDGScan
  DDGScan: an integrated parallel workflow for the in silico point mutation scan of protein
  ☆49Updated last year
• liedllab / surface_analyses
  Scores for Hydrophobicity and Charges based on SASAs
  ☆40Updated 6 months ago
• tommyhuangthu / UniDesign
  Universal framework for physically based computational protein design
  ☆35Updated 2 years ago
• mabr3112 / riff_diff_protflow
  ProtFlow Implementation of the RiffDiff pipeline to design enzymes from theozymes.
  ☆51Updated last week
• meilerlab / HyperMPNN
  HyperMPNN ‒ A general strategy to design thermostable proteins learned from hyperthermophiles
  ☆68Updated 5 months ago
• JosePereiraUA / rosetta-scripts
  Some Rosetta Scripts that allow for various simple tasks
  ☆14Updated 5 years ago
• haddocking / fcc
  Fraction of Common Contacts Clustering Algorithm for Protein Structures
  ☆27Updated 4 years ago
• Wublab / Pythia
  Structure-based self-supervised learning enables ultrafast prediction of stability changes upon mutations
  ☆84Updated this week
• bigict / ProDESIGN-LE
  An accurate and efficient protein sequence design approach
  ☆25Updated 8 months ago
• SLx64 / af3cli
  A command-line interface and Python library for generating AlphaFold3 input files.
  ☆38Updated 6 months ago
• MinchaoFang / HalluDesign
  HalluDesign, a hallucination-driven all-atom framework for the iterative co-optimization and co-design of protein sequences and structure…
  ☆41Updated last week
• Furman-Lab / PatchMAN
  ☆27Updated 2 months ago
• sarisabban / RosettaDesign
  RosettaDesign using PyRosetta
  ☆33Updated 6 years ago
• GMdSilva / gms_natcomms_1705932980_data
  Data sharing for High-throughput Prediction of Changes in Protein Conformational Distributions with Subsampled AlphaFold2
  ☆42Updated last year
• drhicks / Kejia_peptide_binders
  code for IDR binding paper 2025
  ☆61Updated 9 months ago
• matteoferla / rdkit_to_params
  Create or modify Rosetta params files (topology files) from scratch, RDKit mols or another params file
  ☆36Updated 2 weeks ago
• ELELAB / RosettaDDGPrediction
  ☆83Updated 2 weeks ago
• tommyhuangthu / EvoEF2
  Physical energy function for protein sequence design
  ☆34Updated 2 years ago
• luo-group / MODIFY
  ML-optimized library design with improved fitness and diversity for protein engineering
  ☆36Updated last month
• lauramarie99 / ProtDesign2
  ProteinDesign with RFdiffusion and ProteinMPNN/LigandMPNN
  ☆22Updated 9 months ago
• patrickbryant1 / AFProfile
  Improved protein complex prediction with AlphaFold-multimer by denoising the MSA profile
  ☆70Updated last year
• Jfeldman34 / AF3Complex
  ☆51Updated 5 months ago
• HITS-MBM / conan
  Analysis of contacts in molecular dynamics trajectories
  ☆44Updated 6 years ago
• KexinZhangResearch / PhysDock
  Physics-Guided All-Atom Diffusion Model for Accurate Protein-Ligand Complex Prediction
  ☆84Updated 2 months ago
• Mingchenchen / AF3Score
  A Score-Only Adaptation of AlphaFold3 for Biomolecular Structure Evaluation
  ☆78Updated 4 months ago
• samuelmurail / af_analysis
  Analysis of alphafold and colabfold results
  ☆32Updated last week
• Kuhlman-Lab / ThermoMPNN-D
  Extension of ThermoMPNN for double mutant predictions
  ☆49Updated 2 months ago