wendao / CAGE-ProxLinks
Computer aided proximal decaging as a universal strategy for temporal protein activation
☆27Updated 7 months ago
Alternatives and similar repositories for CAGE-Prox
Users that are interested in CAGE-Prox are comparing it to the libraries listed below
Sorting:
- Small_molecule_binder_design_use_pseudocycles☆23Updated last year
- Making Protein folding accessible to all!☆25Updated last year
- Universal framework for physically based computational protein design☆36Updated 2 years ago
- DDGScan: an integrated parallel workflow for the in silico point mutation scan of protein☆49Updated last year
- PyDock Tutorial☆35Updated 7 years ago
- Some Rosetta Scripts that allow for various simple tasks☆14Updated 5 years ago
- Structure-based self-supervised learning enables ultrafast prediction of stability changes upon mutations☆86Updated 3 weeks ago
- An accurate and efficient protein sequence design approach☆25Updated 9 months ago
- A command-line interface and Python library for generating AlphaFold3 input files.☆38Updated this week
- ☆27Updated 3 weeks ago
- ProtFlow Implementation of the RiffDiff pipeline to design enzymes from theozymes.☆64Updated last month
- ProteinDesign with RFdiffusion and ProteinMPNN/LigandMPNN☆22Updated 10 months ago
- HyperMPNN ‒ A general strategy to design thermostable proteins learned from hyperthermophiles☆69Updated 6 months ago
- HalluDesign, a hallucination-driven all-atom framework for the iterative co-optimization and co-design of protein sequences and structure…☆59Updated this week
- Physical energy function for protein sequence design☆34Updated 2 years ago
- code for IDR binding paper 2025☆65Updated 10 months ago
- ML-optimized library design with improved fitness and diversity for protein engineering☆36Updated 2 months ago
- ☆84Updated last month
- RosettaDesign using PyRosetta☆33Updated 6 years ago
- ☆93Updated 2 months ago
- ☆52Updated 6 months ago
- Improved protein complex prediction with AlphaFold-multimer by denoising the MSA profile☆70Updated last year
- Fraction of Common Contacts Clustering Algorithm for Protein Structures☆27Updated 4 years ago
- Analysis of contacts in molecular dynamics trajectories☆45Updated 6 years ago
- Fast and accurate protein domain segmentation using Invariant Point Attention☆43Updated 7 months ago
- An open-source library for the analysis of protein interactions.☆33Updated 4 years ago
- BindCraft modified to make PyRosetta use and installation optional: no license needed☆112Updated last month
- Active Learning-Assisted Directed Evolution for Protein Engineering☆76Updated 2 months ago
- Create or modify Rosetta params files (topology files) from scratch, RDKit mols or another params file☆36Updated this week
- A bundle of deep-learning packages for biomolecular structure prediction and design contributed to the Rosetta Commons☆36Updated 3 years ago