Alternatives and similar repositories for BDI

Users that are interested in BDI are comparing it to the libraries listed below

• GFNOrg / multi-objective-gfn
  Code for "Multi-Objective GFlowNets"
  ☆16Updated 2 years ago
• nataliemaus / lolbo
  ☆32Updated 2 years ago
• tung-nd / ExPT
  ☆18Updated last year
• hnisonoff / discrete_guidance
  Code for our paper "Unlocking Guidance for Discrete State-Space Diffusion and Flow Models"
  ☆29Updated 5 months ago
• MJ10 / BioSeq-GFN-AL
  Code for "Biological Sequence Design with GFlowNets", 2022
  ☆74Updated 2 years ago
• deqiankong / SGDS
  Code for the paper "Molecule Design by Latent Space Energy-based Modeling and Gradual Distribution Shifting" in UAI 2023
  ☆15Updated last year
• vishakhpk / iter-extrapolation
  Repository for code and models for the paper "Extrapolative Controlled Sequence Generation via Iterative Refinement"
  ☆16Updated last year
• ChenyuWang-Monica / DRAKES
  Code for paper: "Fine-Tuning Discrete Diffusion Models via Reward Optimization with Applications to DNA and Protein Design"
  ☆61Updated 5 months ago
• samuelstanton / lambo
  Code to reproduce experiments in "Accelerating Bayesian Optimization for Protein Design with Denoising Autoencoders" (Stanton et al 2022)
  ☆71Updated last year
• jzhoulab / ddsm
  Dirichlet Diffusion Score Model for Biological Sequence Generation.
  ☆62Updated 8 months ago
• HeliXonProtein / proximal-exploration
  PyTorch implementation for our paper "Proximal Exploration for Model-guided Protein Sequence Design"
  ☆37Updated 2 years ago
• vsomnath / aligned_diffusion_bridges
  Aligned Diffusion Schroedinger Bridges (UAI 2023)
  ☆33Updated 2 years ago
• pascalnotin / uncertainty_guided_optimization
  Official repository for the paper "Improving black-box optimization in VAE latent space using decoder uncertainty" (Pascal Notin, José Mi…
  ☆31Updated 2 years ago
• pemami4911 / ppde
  Official repository for "Plug & Play Directed Evolution for Proteins with Gradient-Based Discrete MCMC"
  ☆12Updated 2 years ago
• DeepGraphLearning / PEER_Benchmark
  PEER Benchmark, appear at NeurIPS 2022 Dataset and Benchmark Track (https://arxiv.org/abs/2206.02096)
  ☆95Updated 2 years ago
• maxwshen / gflownet
  ☆19Updated 2 years ago
• andrew-cr / jump-diffusion
  ☆33Updated last year
• olsdavis / fisher-flow
  Official implementation of Fisher-Flow Matching (NeurIPS 2024).
  ☆29Updated 11 months ago
• leojklarner / context-guided-diffusion
  Code for the paper Context-Guided Diffusion for Out-of-Distribution Molecular and Protein Design
  ☆39Updated last year
• prescient-design / holo-bench
  Benchmark for Biophysical Sequence Optimization Algorithms
  ☆20Updated 4 months ago
• Genentech / walk-jump
  Official repository for discrete Walk-Jump Sampling (dWJS)
  ☆53Updated last year
• SeulLee05 / MOOD
  Official code repository for the paper Exploring Chemical Space with Score-based Out-of-distribution Generation (ICML 2023)
  ☆39Updated last year
• zkysfls / 2024-sbdd-benchmark
  ☆12Updated last year
• MadryLab / rla
  Residue Level Alignment
  ☆19Updated 10 months ago
• ml-jku / clamp
  Code for the paper Enhancing Activity Prediction Models in Drug Discovery with the Ability to Understand Human Language
  ☆103Updated last year
• blt2114 / twisted_diffusion_sampler
  Practically and asymptotically accurate conditional sampling from diffusion generative models without conditional training
  ☆46Updated 10 months ago
• prescient-design / walk-jump
  Official repository for discrete Walk-Jump Sampling (dWJS)
  ☆58Updated last year
• VITA-Group / HotProtein
  [ICLR 2023] "HotProtein: A Novel Framework for Protein Thermostability Prediction and Editing" by Tianlong Chen*, Chengyue Gong*, Daniel …
  ☆31Updated 2 years ago
• junsu-kim97 / self_improved_retro
  PyTorch code accompanying the paper "Self-Improved Retrosynthetic Planning" (ICML 2021).
  ☆21Updated 4 years ago
• ujk21 / dyn-informed
  ☆12Updated last year