GGchen1997 / BDILinks
This repository is the official implementation of Bidirectional Learning for Offline Infinite-width Model-based Optimization (NeurIPS 2022) (https://openreview.net/forum?id=_j8yVIyp27Q).
☆15Updated 2 years ago
Alternatives and similar repositories for BDI
Users that are interested in BDI are comparing it to the libraries listed below
Sorting:
- ☆18Updated last year
- Code for "Multi-Objective GFlowNets"☆16Updated 2 years ago
- Code for our paper "Unlocking Guidance for Discrete State-Space Diffusion and Flow Models"☆27Updated 4 months ago
- ☆30Updated 2 years ago
- Code for "Biological Sequence Design with GFlowNets", 2022☆74Updated 2 years ago
- Code for paper: "Fine-Tuning Discrete Diffusion Models via Reward Optimization with Applications to DNA and Protein Design"☆59Updated 3 months ago
- Code to reproduce experiments in "Accelerating Bayesian Optimization for Protein Design with Denoising Autoencoders" (Stanton et al 2022)☆71Updated last year
- ☆19Updated 2 years ago
- Dirichlet Diffusion Score Model for Biological Sequence Generation.☆56Updated 6 months ago
- Supervised Training of Conditional Monge Maps☆18Updated last year
- Benchmarks for Model-Based Optimization☆94Updated last year
- Repository for code and models for the paper "Extrapolative Controlled Sequence Generation via Iterative Refinement"☆16Updated last year
- PyTorch implementation for our paper "Proximal Exploration for Model-guided Protein Sequence Design"☆36Updated 2 years ago
- Code for the paper "Molecule Design by Latent Space Energy-based Modeling and Gradual Distribution Shifting" in UAI 2023☆15Updated last year
- Official implementation of Fisher-Flow Matching (NeurIPS 2024).☆26Updated 10 months ago
- Residue Level Alignment☆18Updated 9 months ago
- Aligned Diffusion Schroedinger Bridges (UAI 2023)☆32Updated last year
- Official repository for the paper "Improving black-box optimization in VAE latent space using decoder uncertainty" (Pascal Notin, José Mi…☆31Updated last year
- Official repository for discrete Walk-Jump Sampling (dWJS)☆53Updated last year
- Benchmark for Biophysical Sequence Optimization Algorithms☆20Updated 3 months ago
- QGFN: Controllable Greediness with Action Values - Code☆10Updated last year
- Code for the paper Iterated Denoising Energy Matching for Sampling from Boltzmann Densities.☆59Updated 4 months ago
- ☆34Updated last year
- Graph Denoising Diffusion for Inverse Protein Folding(NeurIPS 2023)☆66Updated last year
- PEER Benchmark, appear at NeurIPS 2022 Dataset and Benchmark Track (https://arxiv.org/abs/2206.02096)☆93Updated 2 years ago
- Code for the paper https://arxiv.org/abs/2402.04997☆91Updated last year
- Meta in-context learning for protein fitness prediction☆11Updated 6 months ago
- Implementation of the DDPM + IPA (invariant point attention) for protein generation, as outlined in the paper "Protein Structure and Sequ…☆89Updated 3 years ago
- ☆46Updated last month
- GeneDisco is a benchmark suite for evaluating active learning algorithms for experimental design in drug discovery.☆40Updated 2 years ago