Alternatives and similar repositories for rla

Users that are interested in rla are comparing it to the libraries listed below

• BorgwardtLab / PST
  Protein Structure Transformer (PST): Endowing pretrained protein language models with structural knowledge
  ☆44Updated last year
• aqlaboratory / insilico_design_pipeline
  In-silico design pipeline for evaluating protein structure diffusion models.
  ☆27Updated last year
• Vincentx15 / atom2D
  ☆12Updated 11 months ago
• NVlabs / protcomposer
  ☆48Updated 3 months ago
• leojklarner / context-guided-diffusion
  Code for the paper Context-Guided Diffusion for Out-of-Distribution Molecular and Protein Design
  ☆39Updated last year
• instadeepai / protein-structure-tokenizer
  Official implementation of "Learning the language of protein structures"
  ☆39Updated 4 months ago
• Immortals-33 / Scaffold-Lab
  A comprehensive benchmark on the performances of multiple protein backbone generative models.
  ☆64Updated 5 months ago
• lucidrains / ddpm-ipa-protein-generation
  Implementation of the DDPM + IPA (invariant point attention) for protein generation, as outlined in the paper "Protein Structure and Sequ…
  ☆89Updated 3 years ago
• VITA-Group / HotProtein
  [ICLR 2023] "HotProtein: A Novel Framework for Protein Thermostability Prediction and Editing" by Tianlong Chen*, Chengyue Gong*, Daniel …
  ☆31Updated 2 years ago
• chao1224 / ProteinDT
  A Text-guided Protein Design Framework, Nat Mach Intell 2025 (https://www.nature.com/articles/s42256-025-01011-z)
  ☆95Updated 9 months ago
• NVlabs / RetMol
  A new retrieval-based framework for controllable molecule generation.
  ☆49Updated 2 years ago
• dqwang122 / EATLM
  Code for 'On Pre-trained Language Models For Antibody'
  ☆32Updated 2 years ago
• zaixizhang / FAIR
  NeurIPS 2023 Spotlight paper: Full atom protein pocket design via iterative refinement
  ☆47Updated 2 years ago
• BioinfoMachineLearning / EnQA
  A 3D-equivariant neural network for protein structure accuracy estimation
  ☆20Updated 2 years ago
• elttaes / Revisiting-PLMs
  Exploring Evolution-aware & free protein language models as protein function predictors
  ☆63Updated last year
• OpenBioML / protein-lm-scaling
  ☆57Updated last year
• rish-16 / rna-backbone-design
  Source code for RNA-FrameFlow: SE(3) Flow Matching for 3D RNA Backbone Design
  ☆79Updated 2 weeks ago
• BorgwardtLab / proteinshake
  Protein structure datasets for machine learning.
  ☆112Updated 6 months ago
• Genentech / equifold
  Official code repository for EquiFold: Protein Structure Prediction with a Novel Coarse-Grained Structure Representation
  ☆124Updated 2 years ago
• QizhiPei / FABind
  FABind: Fast and Accurate Protein-Ligand Binding (NeurIPS 2023)
  ☆133Updated 3 months ago
• DeepGraphLearning / PEER_Benchmark
  PEER Benchmark, appear at NeurIPS 2022 Dataset and Benchmark Track (https://arxiv.org/abs/2206.02096)
  ☆96Updated 2 years ago
• Profluent-Internships / MMDiff
  Joint Sequence-Structure Generation of Nucleic Acid and Protein Complexes with SE(3)-Discrete Diffusion
  ☆58Updated last year
• divelab / GraphBP
  Official implementation of "Generating 3D Molecules for Target Protein Binding" [ICML2022 Long Presentation]
  ☆109Updated 2 years ago
• KrishnaswamyLab / ProtSCAPE
  ☆19Updated last year
• THUNLP-MT / dyMEAN
  This repo contains the codes for our paper "End-to-End Full-Atom Antibody Design"
  ☆120Updated 8 months ago
• dakpinaroglu / Frame2seq
  Structure-conditioned masked language modeling for protein sequence design
  ☆69Updated last year
• ngruver / NOS
  Protein Design with Guided Discrete Diffusion
  ☆136Updated last year
• blt2114 / ProtDiff_SMCDiff
  Code implementation of "Diffusion probabilistic modeling of protein backbones in 3D for the motif-scaffolding problem" https://arxiv.org/…
  ☆72Updated 2 years ago
• wuhuaijin / EBMDock
  Official implementation for the paper "EBMDOCK: NEURAL PROBABILISTIC PROTEIN-PROTEIN DOCKING VIA A DIFFERENTIABLE ENERGY-BASED MODEL" (IC…
  ☆13Updated last year
• prescient-design / cortex
  A Modular Architecture for Deep Learning Systems
  ☆45Updated 5 months ago