Residue Level Alignment
☆22Nov 21, 2024Updated last year
Alternatives and similar repositories for rla
Users that are interested in rla are comparing it to the libraries listed below
Sorting:
- ☆12Nov 16, 2023Updated 2 years ago
- ESMDynamic repo☆22Updated this week
- ☆12Jul 24, 2025Updated 7 months ago
- Independent evaluation set construction for trustworthy ML models in biochemistry☆16Feb 18, 2026Updated last week
- Official code for Fisher information embedding for node and graph learning (ICML 2023)☆19Jun 17, 2023Updated 2 years ago
- ☆20Oct 3, 2024Updated last year
- [ICLR 2025 Oral] Knowledge Entropy Decay during Language Model Pretraining Hinders New Knowledge Acquisition☆19Nov 25, 2024Updated last year
- Phyla: Towards a Foundation Model for Phylogenetic Inference☆28Nov 20, 2025Updated 3 months ago
- Graph convolutional neural networks for analyzing glycans [LEGACY; use glycowork implementation]☆17Mar 9, 2021Updated 4 years ago
- Protein Structure Transformer (PST): Endowing pretrained protein language models with structural knowledge☆46Oct 17, 2024Updated last year
- RAG-ESM is a retrieval-augmented framework that allows to condition pretrained ESM2 protein language models on homologous sequences☆27Aug 21, 2025Updated 6 months ago
- This repository contains code for the paper: "Tertiary motifs as building blocks for the design of protein-binding peptides"☆21Jan 15, 2024Updated 2 years ago
- AbBFN2: A flexible antibody foundation model based on Bayesian Flow Networks☆37Jun 4, 2025Updated 8 months ago
- ☆27Feb 10, 2024Updated 2 years ago
- All-atom protein generation using latent diffusion, with compositional function and taxonomic prompts. http://bit.ly/plaid-proteins☆120May 27, 2025Updated 9 months ago
- Evolutionary Algorithm with Diffusion Models for Protein Design☆30Jan 7, 2026Updated last month
- Aligning protein generative models with experimental fitness☆118Oct 16, 2025Updated 4 months ago
- Code for our paper "Unlocking Guidance for Discrete State-Space Diffusion and Flow Models"☆33Apr 18, 2025Updated 10 months ago
- Potts model-based protein sequence design☆82Updated this week
- Unofficial implementation of Conformal Language Modeling by Quach et al☆29Jul 15, 2023Updated 2 years ago
- Embedding graphs in symmetric spaces☆30Sep 30, 2021Updated 4 years ago
- ☆47Jul 30, 2025Updated 7 months ago
- Codebase of paper "Structure Language Models for Protein Conformation Generation" (ICLR'25)☆74Feb 24, 2025Updated last year
- PLM-interact: extending protein language models to predict protein-protein interactions.☆61Aug 29, 2025Updated 6 months ago
- Codebase for fine-tuning Llama2 70B to generate math test questions and answers.☆11Aug 30, 2024Updated last year
- CLIP-based model for aligning epitopes to immune receptors☆12Apr 30, 2025Updated 10 months ago
- Intriguing Properties of Data Attribution on Diffusion Models (ICLR 2024)☆37Jan 23, 2024Updated 2 years ago
- ☆33Jun 24, 2024Updated last year
- ☆34Jun 29, 2024Updated last year
- LatentDE: Latent-based Directed Evolution for Protein Sequence Design☆38Apr 2, 2025Updated 11 months ago
- ☆37Aug 28, 2023Updated 2 years ago
- Concurrency library☆17Oct 13, 2024Updated last year
- Official implementation of "Intrinsic Dimension, Persistent Homology and Generalization in Neural Networks", NeurIPS 2021.☆33Mar 25, 2025Updated 11 months ago
- rebuilds and completes models of protein complexes using AlphaFold2☆15Updated this week
- ☆11Dec 23, 2024Updated last year
- Dataset corresponding to the paper: "Form2Seq : A Framework for Higher-Order Form Structure Extraction"☆10Feb 17, 2021Updated 5 years ago
- Repo for paper "CODIS: Benchmarking Context-Dependent Visual Comprehension for Multimodal Large Language Models".☆12Oct 14, 2024Updated last year
- Implementation of Protein Invariant Point Packer (PIPPack)☆35May 28, 2024Updated last year
- Predicting mutational effects on protein-protein binding via a side-chain diffusion probabilistic model (NeurIPS 2023 Poster)☆37Dec 11, 2023Updated 2 years ago