MadryLab / rla
Residue Level Alignment
☆16Updated 4 months ago
Alternatives and similar repositories for rla:
Users that are interested in rla are comparing it to the libraries listed below
- ☆28Updated 2 weeks ago
- Code for 'On Pre-trained Language Models For Antibody'☆33Updated 2 years ago
- NeurIPS 2023 Spotlight paper: Full atom protein pocket design via iterative refinement☆46Updated last year
- Joint Sequence-Structure Generation of Nucleic Acid and Protein Complexes with SE(3)-Discrete Diffusion☆56Updated 10 months ago
- A comprehensive benchmark on the performances of multiple protein backbone generative models.☆53Updated this week
- ☆13Updated 4 months ago
- Full-Atom Peptide Design based on Multi-modal Flow Matching (ICML 2024)☆63Updated 5 months ago
- This repository implements Gibbs sampling with Graph-based Smoothing☆37Updated 9 months ago
- [ICLR 2023] "HotProtein: A Novel Framework for Protein Thermostability Prediction and Editing" by Tianlong Chen*, Chengyue Gong*, Daniel …☆30Updated 2 years ago
- ☆16Updated 5 months ago
- ☆10Updated 11 months ago
- The Enhanced Database of Interacting Protein Structures for Interface Prediction☆48Updated last year
- Protein Structure Transformer (PST): Endowing pretrained protein language models with structural knowledge☆36Updated 5 months ago
- Code for the paper Context-Guided Diffusion for Out-of-Distribution Molecular and Protein Design☆36Updated 8 months ago
- Source code for RNA-FrameFlow: SE(3) Flow Matching for 3D RNA Backbone Design☆45Updated last month
- Structure-conditioned masked language modeling for protein sequence design☆62Updated last year
- The official implementation of DiffAbXL benchmarked in the paper "Exploring Log-Likelihood Scores for Ranking Antibody Sequence Designs",…☆68Updated 5 months ago
- This repo contains the codes for our paper "End-to-End Full-Atom Antibody Design"☆102Updated last month
- A standardized protein design benchmark for motif-scaffolding problems☆43Updated last week
- ☆32Updated last month
- A Modular Architecture for Deep Learning Systems☆40Updated this week
- Joint embedding of protein sequence and structure with discrete and continuous compressions of protein folding model latent spaces. http:…☆113Updated 3 months ago
- 🎈 Structure-aware adapter fine-tuning PLMs, with high training speed and impressive performance (Journal of Chemical Information and Mod…☆21Updated 2 months ago
- [ICLR2025] Official Implementation of IgGM: A Generative Model for Functional Antibody and Nanobody Design☆58Updated last week
- A 3D-equivariant neural network for protein structure accuracy estimation☆18Updated 2 years ago
- Rotamer Density Estimator is an Unsupervised Learner of the Effect of Mutations on Protein-Protein Interaction (ICLR 2023)☆57Updated 9 months ago
- A Text-guided Protein Design Framework, Nat Mach Intell 2025☆56Updated 2 months ago
- ALL Molecular ML papers from ICLR'25.☆22Updated last week
- Official implementation for the paper "EBMDOCK: NEURAL PROBABILISTIC PROTEIN-PROTEIN DOCKING VIA A DIFFERENTIABLE ENERGY-BASED MODEL" (IC…☆13Updated 11 months ago
- Official implementation of "Generating 3D Molecules for Target Protein Binding" [ICML2022 Long Presentation]☆106Updated last year