MadryLab / rlaLinks
Residue Level Alignment
☆18Updated 9 months ago
Alternatives and similar repositories for rla
Users that are interested in rla are comparing it to the libraries listed below
Sorting:
- In-silico design pipeline for evaluating protein structure diffusion models.☆27Updated last year
- ☆12Updated 9 months ago
- Protein Structure Transformer (PST): Endowing pretrained protein language models with structural knowledge☆44Updated 10 months ago
- Code for the paper Context-Guided Diffusion for Out-of-Distribution Molecular and Protein Design☆39Updated last year
- ☆46Updated last month
- NeurIPS 2023 Spotlight paper: Full atom protein pocket design via iterative refinement☆47Updated last year
- Implementation of the DDPM + IPA (invariant point attention) for protein generation, as outlined in the paper "Protein Structure and Sequ…☆89Updated 3 years ago
- Code for 'On Pre-trained Language Models For Antibody'☆33Updated 2 years ago
- A comprehensive benchmark on the performances of multiple protein backbone generative models.☆64Updated 3 months ago
- [ICLR 2023] "HotProtein: A Novel Framework for Protein Thermostability Prediction and Editing" by Tianlong Chen*, Chengyue Gong*, Daniel …☆31Updated 2 years ago
- ☆58Updated last year
- Implementation of Nvidia's NeuralPlexer, for end-to-end differentiable design of functional small-molecules and ligand-binding proteins, …☆52Updated last year
- Official implementation of "Learning the language of protein structures"☆38Updated 2 months ago
- Exploring Evolution-aware & free protein language models as protein function predictors☆63Updated 11 months ago
- ☆19Updated 10 months ago
- A Text-guided Protein Design Framework, Nat Mach Intell 2025 (https://www.nature.com/articles/s42256-025-01011-z)☆91Updated 7 months ago
- Code for paper: "Fine-Tuning Discrete Diffusion Models via Reward Optimization with Applications to DNA and Protein Design"☆59Updated 3 months ago
- Retrieved Sequence Augmentation for Protein Representation Learning☆53Updated last year
- ☆28Updated last year
- A new retrieval-based framework for controllable molecule generation.☆49Updated 2 years ago
- ☆42Updated 2 years ago
- Source code of the paper "Protein Sequence and Structure Co-Design with Equivariant Translation"☆24Updated last year
- Official implementation for the paper "EBMDOCK: NEURAL PROBABILISTIC PROTEIN-PROTEIN DOCKING VIA A DIFFERENTIABLE ENERGY-BASED MODEL" (IC…☆13Updated last year
- Deploying synthetic coevolution and machine learning to engineer protein-protein interactions☆16Updated 2 years ago
- Joint Sequence-Structure Generation of Nucleic Acid and Protein Complexes with SE(3)-Discrete Diffusion☆58Updated last year
- A Modular Architecture for Deep Learning Systems☆43Updated 3 months ago
- A 3D-equivariant neural network for protein structure accuracy estimation☆19Updated 2 years ago
- ☆12Updated last year
- PEER Benchmark, appear at NeurIPS 2022 Dataset and Benchmark Track (https://arxiv.org/abs/2206.02096)☆94Updated 2 years ago
- Structure-conditioned masked language modeling for protein sequence design☆69Updated last year