JinyuanSun / mutation-stability-data
☆17Updated 2 years ago
Alternatives and similar repositories for mutation-stability-data:
Users that are interested in mutation-stability-data are comparing it to the libraries listed below
- Open source code for AlphaFold to extract protein embeddings☆26Updated 3 years ago
- A tool for predicting the effects of missense mutations on protein stability changes upon missense mutation using protein sequence only. …☆22Updated last year
- Predict protein thermostability with ML☆18Updated 8 months ago
- ThermoNet is a computational method for quantitative prediction of the impact of single-point mutations on protein thermodynamic stabilit…☆117Updated last year
- predict stability change upon mutation☆27Updated 9 months ago
- DDGScan: an integrated parallel workflow for the in silico point mutation scan of protein☆48Updated last year
- Implementation of trRosetta and trDesign for Pytorch, made into a convenient package, for protein structure prediction and design☆81Updated 3 years ago
- DistilProtBert implementation, a distilled version of ProtBert model.☆15Updated 2 years ago
- Implementation of Accurate Protein Structure Prediction by Embeddings and Deep Learning Representations☆24Updated 5 years ago
- ☆34Updated 4 years ago
- GREMLIN - learn MRF/potts model from input multiple sequence alignment! Implementation now available in C++ and Tensorflow/Python!☆53Updated 2 years ago
- This repository contains code for reproducing results in our paper Interpreting Potts and Transformer Protein Models Through the Lens of …☆58Updated 2 years ago
- Fast and accurate protein function prediction from sequence through pretrained language model and homology-based label diffusion☆39Updated 8 months ago
- A Python package for extracting protein sequence features☆59Updated 2 years ago
- Iterative masking algorithm on MSA Transformer to generate synthetic sequences☆26Updated last year
- ☆56Updated 2 years ago
- ☆29Updated 4 months ago
- LM-GVP: A Generalizable Deep Learning Framework for Protein Property Prediction from Sequence and Structure☆56Updated last year
- Fork of matteofigliuzzi/bmDCA repository for Boltzmann-machine Direct Coupling Analysis (bmDCA).☆34Updated 4 years ago
- PyTorch implementation of Parapred (Liberis et al., 2018) with Paratyping (Richardson et al., 2021)☆20Updated last year
- Code associated with "Biophysical prediction of protein-peptide interactions and signaling networks using machine learning."☆71Updated last year
- ☆23Updated 2 weeks ago
- Parameter-efficient embeddings for proteins, pretrained using a contrastive loss.☆29Updated 4 years ago
- PDNET: A fully open-source framework for deep learning protein real-valued distances☆35Updated 3 years ago
- An unofficial re-implementation of AntiBERTy, an antibody-specific protein language model, in PyTorch.☆24Updated last year
- NLP for Proteins - A paper collection☆13Updated 4 years ago
- Epistatic Net is an algorithm which allows for spectral regularization of deep neural networks to predict biological fitness functions (e…☆18Updated 3 years ago
- A collection of tasks to probe the effectiveness of protein sequence representations in modeling aspects of protein design☆97Updated 6 months ago
- PDBench is a dataset and software package for evaluating fixed-backbone sequence design algorithms.☆28Updated 2 years ago
- ☆31Updated 4 years ago