JinyuanSun / mutation-stability-dataLinks
☆17Updated 2 years ago
Alternatives and similar repositories for mutation-stability-data
Users that are interested in mutation-stability-data are comparing it to the libraries listed below
Sorting:
- Open source code for AlphaFold to extract protein embeddings☆27Updated 4 years ago
- Predict protein thermostability with ML☆19Updated last year
- DistilProtBert implementation, a distilled version of ProtBert model.☆15Updated 3 years ago
- A tool for predicting the effects of missense mutations on protein stability changes upon missense mutation using protein sequence only. …☆23Updated 2 years ago
- A Python package for extracting protein sequence features☆63Updated 3 years ago
- ☆107Updated last year
- Protein sequence classification with self-supervised pretraining☆82Updated 3 years ago
- Implementation of trRosetta and trDesign for Pytorch, made into a convenient package, for protein structure prediction and design☆83Updated 4 years ago
- Modelling the Language of Life - Deep Learning Protein Sequences☆74Updated 4 years ago
- Official Pytorch implementation of PLUS (Protein sequence representations Learned Using Structural information), IEEE Access 2021☆41Updated 2 years ago
- ThermoNet is a computational method for quantitative prediction of the impact of single-point mutations on protein thermodynamic stabilit…☆118Updated last year
- DeepGO with Fuzzy DL☆30Updated 3 years ago
- predict stability change upon mutation☆28Updated last year
- Fast and accurate protein function prediction from sequence through pretrained language model and homology-based label diffusion☆41Updated last year
- Implementation of Accurate Protein Structure Prediction by Embeddings and Deep Learning Representations☆24Updated 5 years ago
- This repository contains code for reproducing results in our paper Interpreting Potts and Transformer Protein Models Through the Lens of …☆58Updated 3 years ago
- bio-transformers is a wrapper on top of the ESM/Protbert model, trained on millions on proteins and used to predict embeddings.☆155Updated 2 years ago
- LM-GVP: A Generalizable Deep Learning Framework for Protein Property Prediction from Sequence and Structure☆64Updated last year
- Library of models for Protein Function prediction (part of the 18th top solution out of 1625 teams in CAFA5)☆19Updated 5 months ago
- Variational autoencoder for protein sequences - add metal binding sites and generate sequences for novel topologies☆90Updated 2 years ago
- ☆17Updated 2 years ago
- ☆44Updated 10 months ago
- PaccMann models for protein language modeling☆43Updated 3 years ago
- ☆34Updated 5 years ago
- Unsupervised neural network for learning embeddings of GO terms.☆18Updated 3 years ago
- PyTorch implementation of Parapred (Liberis et al., 2018) with Paratyping (Richardson et al., 2021)☆20Updated 2 years ago
- Note that current version does not include search of very large metagenome data. For some proteins, metagenome data is important. We will…☆98Updated 3 years ago
- Python utility to estimate, compare, and reweight RNA energetics across many secondary structure algorithms.☆105Updated 4 months ago
- Implementation and replication of ProGen, Language Modeling for Protein Generation, in Jax☆112Updated 4 years ago
- ☆59Updated 2 years ago