idrori / cu-tspLinks
Implementation of Accurate Protein Structure Prediction by Embeddings and Deep Learning Representations
☆24Updated 5 years ago
Alternatives and similar repositories for cu-tsp
Users that are interested in cu-tsp are comparing it to the libraries listed below
Sorting:
- Guided Conditional Wasserstein GAN for De Novo Protein Design☆37Updated 4 years ago
- Code for Fold2Seq paper from ICML 2021☆50Updated 3 years ago
- Preforms De novo protein design using machine learning and PyRosetta to generate a novel protein structure☆52Updated 3 months ago
- Code for "A Deep Learning Framework for Flexible Docking and Design"☆16Updated 2 years ago
- mGPfusion is a Gaussian process based method for predicting stability changes upon single and multiple mutations of proteins that comple…☆15Updated 7 years ago
- ☆29Updated 4 years ago
- A C, C++, Python project focusing on Docking analysis, Source code, Blogs, Data availability, References.☆26Updated 2 years ago
- Implementation of trRosetta and trDesign for Pytorch, made into a convenient package, for protein structure prediction and design☆82Updated 3 years ago
- An unofficial re-implementation of AntiBERTy, an antibody-specific protein language model, in PyTorch.☆24Updated last year
- DistilProtBert implementation, a distilled version of ProtBert model.☆15Updated 2 years ago
- Fork of matteofigliuzzi/bmDCA repository for Boltzmann-machine Direct Coupling Analysis (bmDCA).☆35Updated 4 years ago
- PDNET: A fully open-source framework for deep learning protein real-valued distances☆35Updated 4 years ago
- Implementation of MolSearch paper☆22Updated last year
- Code for ICML 2023 paper "Reprogramming Pretrained Language Models for Antibody Sequence Infilling"☆24Updated last year
- Code for our paper "Protein sequence design with a learned potential"☆34Updated 3 years ago
- PyTorch implementation for our paper "Proximal Exploration for Model-guided Protein Sequence Design"☆36Updated last year
- Learning with uncertainty for biological discovery and design☆34Updated 2 years ago
- ☆34Updated 3 years ago
- The Enhanced Database of Interacting Protein Structures for Interface Prediction☆49Updated last year
- Machine Learning Designs Non-Hemolytic Antimicrobial Peptides☆35Updated 4 years ago
- ☆38Updated 4 years ago
- Learning protein representation for rigid-body docking☆22Updated 5 years ago
- Code for our paper "Protein sequence design with a learned potential"☆79Updated last year
- ResPRE is an algorithm for protein residue-residue contact-map prediction☆21Updated 6 years ago
- Variational autoencoder for protein sequences - add metal binding sites and generate sequences for novel topologies☆87Updated last year
- Intrinsic-Extrinsic Convolution and Pooling for Learning on 3D Protein Structures☆47Updated 3 years ago
- Pytorch implementation of BionoiNet, which is a deep learning-based software to classify ligand-binding sites.☆20Updated 4 years ago
- Open source code for AlphaFold to extract protein embeddings☆26Updated 3 years ago
- Code and data for QMO https://arxiv.org/abs/2011.01921☆35Updated 3 years ago
- ☆20Updated 3 years ago