☆34Oct 5, 2020Updated 5 years ago
Alternatives and similar repositories for protein-embedding-retrieval
Users that are interested in protein-embedding-retrieval are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Solvent Accessible Surface Areas of Biomolecules and their Complexes☆19Feb 21, 2026Updated 2 months ago
- SPOT-1D-LM: Reaching Alignment-profile-based Accuracy in Predicting Protein Secondary and Tertiary Structural Properties without Alignmen…☆11Feb 1, 2024Updated 2 years ago
- ☆12Dec 2, 2024Updated last year
- ☆40Apr 24, 2018Updated 8 years ago
- OPUS-Rota4: A Gradient-Based Protein Side-Chain Modeling Framework Assisted by Deep Learning-Based Predictors☆11Apr 14, 2022Updated 4 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Energy-based models for atomic-resolution protein conformations☆103Mar 22, 2022Updated 4 years ago
- ProtVec can be used in protein interaction predictions, structure prediction, and protein data visualization.☆34Dec 8, 2022Updated 3 years ago
- DeepGS: Deep Representation Learning of Graphs and Sequences for Drug-Target Binding Affinity Prediction (ECAI 2020)☆26Oct 22, 2020Updated 5 years ago
- MSA-Regularized Protein Sequence Transformer toward Predicting Genome-Wide Chemical-Protein Interactions: Application to GPCRome Deorphan…☆11Oct 16, 2022Updated 3 years ago
- Reimplementation of the UniRep protein featurization model.☆108Sep 3, 2024Updated last year
- demo code for "Video Prediction via Selective Sampling" (NeurIPS 2018)☆12Jul 15, 2020Updated 5 years ago
- Python package to atom map, correct and suggest enzymatic reactions☆45Apr 11, 2024Updated 2 years ago
- ☆23Dec 4, 2025Updated 5 months ago
- Implementation of Lie Transformer, Equivariant Self-Attention, in Pytorch☆97Feb 19, 2021Updated 5 years ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- This repository contains code for reproducing results in our paper Interpreting Potts and Transformer Protein Models Through the Lens of …☆59Sep 30, 2022Updated 3 years ago
- OPUS-Fold: An Open-Source Protein Folding Framework Based on Torsion-Angle Sampling☆21May 4, 2020Updated 6 years ago
- ☆26May 9, 2022Updated 3 years ago
- CARE: a Benchmark Suite for the Classification and Retrieval of Enzymes☆44Jun 17, 2025Updated 10 months ago
- ☆29Jul 10, 2020Updated 5 years ago
- Fully convolutional neural networks for protein residue-residue contact prediction☆44Mar 25, 2019Updated 7 years ago
- Multivariate Gaussian Direct Coupling Analysis for residue contact prediction in protein families - Julia module☆23Jan 27, 2022Updated 4 years ago
- Implementation of Geometric Vector Perceptron, a simple circuit for 3d rotation equivariance for learning over large biomolecules, in Pyt…☆77Jun 8, 2021Updated 4 years ago
- The core part of Atomic Charge Calculator III.☆29Mar 23, 2026Updated last month
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- Neural Bacteriocin Identifier - a recurrent neural network based software to predict bacteriocins from protein sequences.☆18Mar 25, 2023Updated 3 years ago
- Tasks Assessing Protein Embeddings (TAPE), a set of five biologically relevant semi-supervised learning tasks spread across different dom…☆739Dec 11, 2022Updated 3 years ago
- Official implementation of NeurIPS'24 paper "Bridge-IF: Learning Inverse Protein Folding with Markov Bridges"☆18Mar 16, 2025Updated last year
- Faster, more accurate and entirely open source method for predicting contacts in proteins☆12May 21, 2018Updated 7 years ago
- ☆51Dec 2, 2024Updated last year
- Official code repository of "BERTology Meets Biology: Interpreting Attention in Protein Language Models."☆305May 1, 2025Updated last year
- Get protein embeddings from protein sequences☆508Apr 28, 2023Updated 3 years ago
- OPUS-TASS: A Protein Backbone Torsion Angles and Secondary Structure Predictor Based on Ensemble Neural Networks☆10Jul 9, 2020Updated 5 years ago
- We present Envision, an accurate predictor of protein variant molecular effect, trained using large-scale experimental mutagenesis data. …☆20Jan 5, 2018Updated 8 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- A Christmas tree protein☆19Dec 27, 2024Updated last year
- UniRep model, usage, and examples.☆362Mar 1, 2026Updated 2 months ago
- Graph Inference on MoLEcular Topology☆26Mar 25, 2023Updated 3 years ago
- Position embedding in PyTorch☆16Jul 11, 2020Updated 5 years ago
- HiCOPS: Computational framework for peptide identification from MS data through accelerated database search☆10Mar 24, 2023Updated 3 years ago
- SE(3)-equivariant point cloud networks for virtual screening☆24Apr 29, 2023Updated 3 years ago
- Maturin Starter Project w/PyO3 & Poetry☆13Aug 28, 2022Updated 3 years ago