Alternatives and similar repositories for ddgun

Users that are interested in ddgun are comparing it to the libraries listed below

• Rappsilber-Laboratory / AlphaLink2
  AlphaLink2: Integrating crosslinking MS data into Uni-Fold-Multimer
  ☆58Updated 2 months ago
• KULL-Centre / _2022_ML-ddG-Blaabjerg
  ☆54Updated 3 months ago
• dina-lab3D / CombFold
  ☆88Updated last year
• rochoa85 / PepFun
  Bioinformatics and Cheminformatics protocols for peptide analysis
  ☆43Updated 2 years ago
• JinyuanSun / DDGScan
  DDGScan: an integrated parallel workflow for the in silico point mutation scan of protein
  ☆48Updated last year
• cmbi / dssp
  The DSSP building software
  ☆47Updated 2 years ago
• lhatsk / AlphaLink
  AlphaLink: Integrating crosslinking MS data into OpenFold
  ☆71Updated last year
• KIT-MBS / pydca
  Direct coupling analysis software for protein and RNA sequences
  ☆53Updated 3 months ago
• proteinphysiologylab / frustratometeR
  ☆37Updated 4 months ago
• patrickbryant1 / SpeedPPI
  Rapid protein-protein interaction network creation from multiple sequence alignments with Deep Learning
  ☆90Updated last year
• Faezov / PDBrenum
  ☆30Updated 6 months ago
• AbSciBio / igdesign
  ☆47Updated 10 months ago
• haddocking / haddock-tools
  Set of useful HADDOCK utility scripts
  ☆55Updated last month
• Andre-lab / evodock
  A Memetic Algorithm boosts accuracy and speed of all-atom protein-protein docking
  ☆29Updated 4 months ago
• psipred / ted-tools
  ML toolset for creating TED: The Encyclopedia of Domains
  ☆24Updated 5 months ago
• PDB-REDO / alphafill
  AlphaFill is an algorithm based on sequence and structure similarity that “transplants” missing compounds to the AlphaFold models. By add…
  ☆108Updated last month
• kiharalab / NuFold
  NuFold: End-to-End Approach for RNA Tertiary Structure Prediction with Flexible Nucleobase Center Representation
  ☆46Updated 2 weeks ago
• clami66 / AF_unmasked
  Source code and examples for AlphaFold Unmasked
  ☆75Updated last month
• pylelab / rMSA
  RNA Multiple Sequence Alignment
  ☆46Updated 2 years ago
• Graylab / AlphaRED
  AlphaFold-initiated replica exchange protein docking
  ☆84Updated 5 months ago
• RosettaCommons / Rosetta-DL
  A bundle of deep-learning packages for biomolecular structure prediction and design contributed to the Rosetta Commons
  ☆36Updated 3 years ago
• chaconlab / korpm
  Predicting the effect of mutations on protein stability using a simple orientational potential.
  ☆16Updated last year
• compbiomed-unito / acdc-nn
  ☆22Updated 2 years ago
• kWeissenow / EMBER3D
  Ultra-fast in-silico structure mutation
  ☆35Updated 7 months ago
• DeepRank / DeepRank-GNN-esm
  Graph Network for protein-protein interface including language model features
  ☆33Updated last year
• patrickbryant1 / AFProfile
  Improved protein complex prediction with AlphaFold-multimer by denoising the MSA profile
  ☆70Updated last year
• data2code / afpdb
  Efficient manipulation of protein structures in Python
  ☆60Updated last month
• Nucleus2014 / protease-gcnn-pytorch
  ☆21Updated 2 years ago
• psipred / s4pred
  A tool for accurate prediction of a protein's secondary structure from only it's amino acid sequence
  ☆60Updated 7 months ago
• swanss / peptide_design
  This repository contains code for the paper: "Tertiary motifs as building blocks for the design of protein-binding peptides"
  ☆19Updated last year