Alternatives and similar repositories for ProFun

Users that are interested in ProFun are comparing it to the libraries listed below

• bio-ontology-research-group / deepgozero
  DeepGO with Fuzzy DL
  ☆30Updated 2 years ago
• xinformatics / alphafold
  Open source code for AlphaFold to extract protein embeddings
  ☆26Updated 3 years ago
• jafetgado / ThermoProt
  Predict protein thermostability with ML
  ☆19Updated 8 months ago
• ShahidIqb / PROST
  A tool for predicting the effects of missense mutations on protein stability changes upon missense mutation using protein sequence only. …
  ☆22Updated last year
• ml-jku / mgenerators-failure-modes
  Shows some of the ways molecule generation and optimization can go wrong
  ☆16Updated last year
• ratthachat / deep-rna
  Easy & Pretrained SOTA Deep Learning for RNA strings
  ☆12Updated 3 years ago
• IBM / ReprogBERT
  Code for ICML 2023 paper "Reprogramming Pretrained Language Models for Antibody Sequence Infilling"
  ☆23Updated last year
• brianhie / uncertainty
  Learning with uncertainty for biological discovery and design
  ☆34Updated 2 years ago
• microsoft / protein-transfer
  ☆26Updated 11 months ago
• aedera / anc2vec
  Unsupervised neural network for learning embeddings of GO terms.
  ☆18Updated 3 years ago
• biomed-AI / SPROF-GO
  Fast and accurate protein function prediction from sequence through pretrained language model and homology-based label diffusion
  ☆39Updated 9 months ago
• gozsari / ProtFeat
  ProtFeat is protein feature extraction tool that utilizes POSSUM and iFeature.
  ☆20Updated 8 months ago
• arontier / A_Prot_Paper
  A Prot paper related materials
  ☆10Updated 2 years ago
• cognano / AVIDa-SARS-CoV-2
  Code for NeurIPS 2024 paper "A SARS-CoV-2 Interaction Dataset and VHH Sequence Corpus for Antibody Language Models"
  ☆12Updated 7 months ago
• zongmingchua / cafa5
  Code for generating model and predictions for CAFA5 competition 2023 (4th place solution)
  ☆13Updated 11 months ago
• microsoft / peft_proteomics
  LoRA for protein language models
  ☆37Updated last year
• genedisco / genedisco
  GeneDisco is a benchmark suite for evaluating active learning algorithms for experimental design in drug discovery.
  ☆37Updated last year
• OpenBioML / protein-lm-scaling
  ☆59Updated last year
• PaccMann / paccmann_kinase_binding_residues
  Comparison of active site and full kinase sequences for drug-target affinity prediction and molecular generation. Full paper: https://pub…
  ☆36Updated 2 years ago
• cgoliver / rnaglib
  Deep learning datasets for RNA 3D and 2.5D structures.
  ☆34Updated this week
• pylelab / Arena
  ☆16Updated last year
• CongLabCode / RoseTTAFold2-PPI
  Fast deep learning methods for large-scale protein-protein interaction screening
  ☆39Updated 2 weeks ago
• ratthachat / awesome-biochem-ai
  Curated list on Deep Transformers Applications on Biology and Chemistry
  ☆18Updated 2 years ago
• Ieremie / TransformerGO
  ☆17Updated 3 years ago
• liudan111 / PLM-interact
  PLM-interact: extending protein language models to predict protein-protein interactions.
  ☆20Updated 5 months ago
• leojklarner / Q-SAVI
  Drug Discovery under Covariate Shift with Domain-Informed Prior Distributions over Functions
  ☆24Updated last year
• leeyang / DRfold2
  ☆27Updated last month
• BioColLab / PFresGO
  ☆21Updated last year
• haddocking / prodigy-lig
  Prediction of Protein-Small molecule binding affinities
  ☆16Updated 7 months ago
• amyxlu / CPCProt
  Parameter-efficient embeddings for proteins, pretrained using a contrastive loss.
  ☆29Updated 4 years ago