Implementation of trRosetta and trDesign for Pytorch, made into a convenient package, for protein structure prediction and design
☆83Aug 27, 2021Updated 5 years ago
Alternatives and similar repositories for tr-rosetta-pytorch
Users that are interested in tr-rosetta-pytorch are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- pytorch implementation of trDesign☆45Mar 19, 2021Updated 5 years ago
- Repository for publicly available deep learning models developed in Rosetta community☆123Sep 18, 2021Updated 5 years ago
- trRosetta for protein design☆184May 15, 2021Updated 5 years ago
- Codebase for our preprint using trRosetta to design proteins with discontinuous functional sites, found here: https://www.biorxiv.org/con…☆16Oct 27, 2021Updated 5 years ago
- A package to predict protein inter-residue geometries from sequence data☆221Sep 27, 2021Updated 5 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Preforms De novo protein design using machine learning and PyRosetta to generate a novel protein structure☆52Mar 7, 2025Updated last year
- A denoising diffusion probabilistic model (DDPM) tailored for conditional generation of protein distograms☆143Apr 20, 2022Updated 4 years ago
- Code for our paper "Protein sequence design with a learned potential"☆34Aug 5, 2021Updated 5 years ago
- Protein hallucination and inpainting with RoseTTAFold☆284Mar 30, 2023Updated 3 years ago
- Implementation of Denoising Diffusion for protein design, but using the new Equiformer (successor to SE3 Transformers) with some addition…☆57Dec 27, 2022Updated 3 years ago
- open source repository☆149Nov 30, 2023Updated 2 years ago
- Code and software used to design de novo protein nanomachines. Supplementary material for "Computational design of nanoscale rotational m…☆10Mar 19, 2022Updated 4 years ago
- ☆11Aug 5, 2020Updated 6 years ago
- Implementation of the DDPM + IPA (invariant point attention) for protein generation, as outlined in the paper "Protein Structure and Sequ…☆89Jul 25, 2022Updated 4 years ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- Code for our paper "Protein sequence design with a learned potential"☆81Sep 8, 2023Updated 3 years ago
- Implementation and replication of ProGen, Language Modeling for Protein Generation, in Jax☆114Sep 8, 2021Updated 5 years ago
- ☆19Oct 4, 2022Updated 4 years ago
- Code for Fold2Seq paper from ICML 2021☆50May 25, 2022Updated 4 years ago
- Attempt at reproduction of AlphaFold2☆99Jul 30, 2026Updated 3 months ago
- Implementation of Lie Transformer, Equivariant Self-Attention, in Pytorch☆98Feb 19, 2021Updated 5 years ago
- Guided Conditional Wasserstein GAN for De Novo Protein Design☆35Feb 23, 2021Updated 5 years ago
- ☆121Dec 7, 2022Updated 3 years ago
- ☆18Mar 13, 2024Updated 2 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Fitness landscape exploration sandbox for biological sequence design.☆177Feb 16, 2023Updated 3 years ago
- Deep learning architectures for protein secondary structure prediction (version 2)☆11Mar 24, 2023Updated 3 years ago
- Implementation of Invariant Point Attention, used for coordinate refinement in the structure module of Alphafold2, as a standalone Pytorc…☆173Nov 25, 2022Updated 3 years ago
- A series of scripts that facilitate the prediction of protein structures in multiple conformations using AlphaFold2☆99Aug 29, 2023Updated 3 years ago
- Universal framework for physically based computational protein design☆36Oct 20, 2026Updated 2 weeks ago
- Controlling the usage of hydrophobic residues on AfDesign for binder peptide design with AlphaFold hallucination protocol☆31Aug 10, 2023Updated 3 years ago
- Implementation of Protein Invariant Point Packer (PIPPack)☆37May 28, 2024Updated 2 years ago
- Generative Models for Graph-Based Protein Design☆292Dec 24, 2020Updated 5 years ago
- Tool for modelling the CDRs of antibodies☆52Jan 19, 2023Updated 3 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- De novo design of small molecule binding sites into proteins☆11Apr 14, 2021Updated 5 years ago
- Implementation of the Triangle Multiplicative module, used in Alphafold2 as an efficient way to mix rows or columns of a 2d feature map, …☆39Aug 3, 2021Updated 5 years ago
- OPUS-Fold: An Open-Source Protein Folding Framework Based on Torsion-Angle Sampling☆21May 4, 2020Updated 6 years ago
- Implementation of Cross Transformer for spatially-aware few-shot transfer, in Pytorch☆54Mar 30, 2021Updated 5 years ago
- Implementation of Chroma, generative models of protein using DDPM and GNNs, in Pytorch☆159Dec 27, 2022Updated 3 years ago
- Pytorch/Python3 implementation of DeepAccNet, protein model accuracy evaluator.☆90Jun 18, 2021Updated 5 years ago
- To eventually become an unofficial Pytorch implementation / replication of Alphafold2, as details of the architecture get released☆1,642Oct 29, 2022Updated 4 years ago