lucidrains / tr-rosetta-pytorchLinks
Implementation of trRosetta and trDesign for Pytorch, made into a convenient package, for protein structure prediction and design
☆83Updated 4 years ago
Alternatives and similar repositories for tr-rosetta-pytorch
Users that are interested in tr-rosetta-pytorch are comparing it to the libraries listed below
Sorting:
- Implementation of the DDPM + IPA (invariant point attention) for protein generation, as outlined in the paper "Protein Structure and Sequ…☆89Updated 3 years ago
- Code for Fold2Seq paper from ICML 2021☆50Updated 3 years ago
- A geometric deep learning framework (Geometric Transformers) for predicting protein interface contacts. (ICLR 2022)☆64Updated 3 years ago
- PyTorch implementation for our paper "Proximal Exploration for Model-guided Protein Sequence Design"☆37Updated 2 years ago
- Database of Interacting Protein Structures (DIPS)☆102Updated last year
- Code for our paper "Protein sequence design with a learned potential"☆80Updated 2 years ago
- Implementation of Chroma, generative models of protein using DDPM and GNNs, in Pytorch☆158Updated 2 years ago
- The Enhanced Database of Interacting Protein Structures for Interface Prediction☆50Updated 2 months ago
- Implementation and replication of ProGen, Language Modeling for Protein Generation, in Jax☆112Updated 4 years ago
- ThermoNet is a computational method for quantitative prediction of the impact of single-point mutations on protein thermodynamic stabilit…☆119Updated last year
- Official code repository for EquiFold: Protein Structure Prediction with a Novel Coarse-Grained Structure Representation☆125Updated 2 years ago
- A protein 3D structure prediction application☆67Updated 4 years ago
- A list of manuscripts/tools using diffusion on biological enttieis☆97Updated 2 years ago
- RITA is a family of autoregressive protein models, developed by LightOn in collaboration with the OATML group at Oxford and the Debora Ma…☆98Updated 2 years ago
- Repository for publicly available deep learning models developed in Rosetta community☆120Updated 4 years ago
- open source repository☆143Updated last year
- Attempt at reproduction of AlphaFold2☆98Updated last year
- Intrinsic-Extrinsic Convolution and Pooling for Learning on 3D Protein Structures☆48Updated 3 years ago
- LM-GVP: A Generalizable Deep Learning Framework for Protein Property Prediction from Sequence and Structure☆64Updated last year
- A collection of tasks to probe the effectiveness of protein sequence representations in modeling aspects of protein design☆108Updated last year
- Code for "Protein Docking Model Evaluation by Graph Neural Networks"☆59Updated 2 years ago
- source code for https://arxiv.org/abs/2005.11248 "Accelerating Antimicrobial Discovery with Controllable Deep Generative Models and Molec…☆106Updated 2 months ago
- Protein quality assessment using Graph Convolutional Networks☆29Updated 3 years ago
- PyTorch library of layers acting on protein representations☆119Updated last year
- NeurIPS 2024 Dataset and Benchmark Submission "AsEP: Benchmarking Deep Learning Methods for Antibody-specific Epitope Prediction"☆29Updated last year
- ☆132Updated last year
- Implementation of DiffPack: A Torsional Diffusion Model for Autoregressive Protein Side-Chain Packing☆88Updated last year
- Exploring Evolution-aware & free protein language models as protein function predictors☆63Updated last year
- Implementation of Invariant Point Attention, used for coordinate refinement in the structure module of Alphafold2, as a standalone Pytorc…☆169Updated 2 years ago
- Official repository for discrete Walk-Jump Sampling (dWJS)☆58Updated last year