lucidrains / tr-rosetta-pytorchLinks
Implementation of trRosetta and trDesign for Pytorch, made into a convenient package, for protein structure prediction and design
☆82Updated 3 years ago
Alternatives and similar repositories for tr-rosetta-pytorch
Users that are interested in tr-rosetta-pytorch are comparing it to the libraries listed below
Sorting:
- Code for Fold2Seq paper from ICML 2021☆50Updated 3 years ago
- Implementation of the DDPM + IPA (invariant point attention) for protein generation, as outlined in the paper "Protein Structure and Sequ…☆89Updated 3 years ago
- Database of Interacting Protein Structures (DIPS)☆102Updated last year
- A geometric deep learning framework (Geometric Transformers) for predicting protein interface contacts. (ICLR 2022)☆64Updated 3 years ago
- Implementation and replication of ProGen, Language Modeling for Protein Generation, in Jax☆113Updated 3 years ago
- Implementation of Chroma, generative models of protein using DDPM and GNNs, in Pytorch☆159Updated 2 years ago
- PyTorch implementation for our paper "Proximal Exploration for Model-guided Protein Sequence Design"☆36Updated last year
- Code for our paper "Protein sequence design with a learned potential"☆79Updated last year
- The Enhanced Database of Interacting Protein Structures for Interface Prediction☆49Updated last year
- ☆120Updated 11 months ago
- RITA is a family of autoregressive protein models, developed by LightOn in collaboration with the OATML group at Oxford and the Debora Ma…☆98Updated 2 years ago
- Open source code for AlphaFold to extract protein embeddings☆27Updated 4 years ago
- LM-GVP: A Generalizable Deep Learning Framework for Protein Property Prediction from Sequence and Structure☆58Updated last year
- open source repository☆139Updated last year
- Repository for publicly available deep learning models developed in Rosetta community☆117Updated 3 years ago
- Geometric Vector Perceptron --- a rotation-equivariant GNN for learning from biomolecular structure☆148Updated 4 years ago
- Protein quality assessment using Graph Convolutional Networks☆29Updated 2 years ago
- ThermoNet is a computational method for quantitative prediction of the impact of single-point mutations on protein thermodynamic stabilit…☆117Updated last year
- source code for https://arxiv.org/abs/2005.11248 "Accelerating Antimicrobial Discovery with Controllable Deep Generative Models and Molec…☆103Updated 2 years ago
- Code for "Protein Docking Model Evaluation by Graph Neural Networks"☆59Updated 2 years ago
- A protein 3D structure prediction application☆66Updated 4 years ago
- Attempt at reproduction of AlphaFold2☆95Updated 9 months ago
- Official repository for discrete Walk-Jump Sampling (dWJS)☆57Updated last year
- A collection of tasks to probe the effectiveness of protein sequence representations in modeling aspects of protein design☆102Updated 10 months ago
- PyTorch library of layers acting on protein representations☆119Updated last year
- Official repository for the paper "Tranception: Protein Fitness Prediction with Autoregressive Transformers and Inference-time Retrieval"☆160Updated last year
- Variational autoencoder for protein sequences - add metal binding sites and generate sequences for novel topologies☆87Updated 2 years ago
- A list of manuscripts/tools using diffusion on biological enttieis☆97Updated last year
- Guided Conditional Wasserstein GAN for De Novo Protein Design☆37Updated 4 years ago
- Official code repository for EquiFold: Protein Structure Prediction with a Novel Coarse-Grained Structure Representation☆121Updated 2 years ago