A tool for predicting the effects of missense mutations on protein stability changes upon missense mutation using protein sequence only. PROST uses colab AlhpaFold2 for the prediction of pdb struture from FASTA sequence.
☆23Jun 3, 2023Updated 2 years ago
Alternatives and similar repositories for PROST
Users that are interested in PROST are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- MVP (Qi et al 2021) source code☆17May 11, 2021Updated 4 years ago
- ☆13Sep 29, 2023Updated 2 years ago
- Some scoring functions for predicting the effects of mutations on protein sequences using ESM-2☆11Dec 10, 2023Updated 2 years ago
- ☆56Feb 16, 2026Updated last month
- ThermoNet is a computational method for quantitative prediction of the impact of single-point mutations on protein thermodynamic stabilit…☆119Dec 20, 2023Updated 2 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting with the flexibility to host WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Cloudways by DigitalOcean.
- ☆85Nov 25, 2025Updated 4 months ago
- An R package for extracting mutational signatures from vcf files☆11Feb 13, 2025Updated last year
- This repository contains the codebase for the paper "Leveraging ancestral sequence reconstruction for protein representation learning".☆12Apr 13, 2025Updated 11 months ago
- Predicting the effect of mutations on protein stability using a simple orientational potential.☆19Jul 5, 2024Updated last year
- Protein representation and design under a single training scheme☆24Mar 3, 2026Updated 3 weeks ago
- The official GitHub repository for the Nature Communications paper "Computational Design of Generalist Cyclopropanases with Stereodiverge…☆13Jan 23, 2026Updated 2 months ago
- ☆16Jun 2, 2024Updated last year
- ☆15Jun 7, 2022Updated 3 years ago
- A transformer model to predict pathogenic mutations☆12Jun 25, 2025Updated 9 months ago
- DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- workflow to analysis of whole-exome-sequencing☆12Feb 12, 2020Updated 6 years ago
- DE-STRESS is a model evaluation pipeline that aims to make protein design more reliable and accessible.☆31Mar 4, 2025Updated last year
- 基于BmobPush SDK开发的官方Android版示例。☆13Apr 14, 2020Updated 5 years ago
- A project - tutorial. Differential expression of RNAseq raw counts data using a Real world dataset in R. Packages covered 'DESeq2' and 'E…☆13Nov 18, 2022Updated 3 years ago
- ProteinReDiff: Complex-based ligand-binding proteins redesign by equivariant diffusion-based generative models☆39Nov 25, 2024Updated last year
- predict stability change upon mutation☆30Jun 28, 2024Updated last year
- ☆35Sep 21, 2023Updated 2 years ago
- protein docking stuff☆52Sep 2, 2024Updated last year
- GRACE: Generative Renaissance in Artificial Computational Enzyme Design☆19Jan 8, 2025Updated last year
- Open source password manager - Proton Pass • AdSecurely store, share, and autofill your credentials with Proton Pass, the end-to-end encrypted password manager trusted by millions.
- Jupyter notebook repository for reproducing analysis in "DNA Methylation Landscape of the Mouse Brain at Single-Cell Resolution"☆14Apr 1, 2020Updated 5 years ago
- ☆66Apr 8, 2025Updated 11 months ago
- Tool(s) for cleaning, munging and analysing PDB files for structural bioinformatics analysis.☆14May 29, 2019Updated 6 years ago
- ☆27May 24, 2024Updated last year
- Utility scripts to generate and evaluate parametrically guided beta barrel protein backbone structures.☆14Nov 14, 2025Updated 4 months ago
- Cross-protein transfer learning for variant effect prediction☆20Sep 13, 2023Updated 2 years ago
- ProteinDesign with RFdiffusion and ProteinMPNN/LigandMPNN☆23Mar 6, 2025Updated last year
- Image classification using SVM, KNN, Bayes, Adaboost, Random Forest and CNN.Extracting features and reducting feature dimension using T-S…☆13Aug 12, 2020Updated 5 years ago
- ☆15Sep 29, 2025Updated 5 months ago
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- A collection of molecular modelling tools for UCSF Chimera☆18Mar 26, 2019Updated 7 years ago
- Course website for Johns Hopkins BSPH Statistical Computing (Biostatistics 140.776) in Fall 2022☆17Oct 20, 2022Updated 3 years ago
- ☆96Oct 14, 2025Updated 5 months ago
- ☆15Apr 3, 2025Updated 11 months ago
- ☆19Apr 16, 2024Updated last year
- A tutorial on cobrapy☆10Nov 23, 2022Updated 3 years ago
- Material from papers from KULL centre☆71May 29, 2024Updated last year