A tool for predicting the effects of missense mutations on protein stability changes upon missense mutation using protein sequence only. PROST uses colab AlhpaFold2 for the prediction of pdb struture from FASTA sequence.
☆23Jun 3, 2023Updated 3 years ago
Alternatives and similar repositories for PROST
Users that are interested in PROST are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- MVP (Qi et al 2021) source code☆18May 11, 2021Updated 5 years ago
- ☆13Sep 29, 2023Updated 2 years ago
- Some scoring functions for predicting the effects of mutations on protein sequences using ESM-2☆12Dec 10, 2023Updated 2 years ago
- ☆58Apr 15, 2026Updated 5 months ago
- ThermoNet is a computational method for quantitative prediction of the impact of single-point mutations on protein thermodynamic stabilit…☆120Dec 20, 2023Updated 2 years ago
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- ☆10Sep 13, 2021Updated 5 years ago
- ☆98Nov 25, 2025Updated 10 months ago
- An R package for extracting mutational signatures from vcf files☆11Feb 13, 2025Updated last year
- This repository contains the codebase for the paper "Leveraging ancestral sequence reconstruction for protein representation learning".☆14Jun 24, 2026Updated 3 months ago
- 基于BmobPush SDK开发的官方Android版示例。☆13Apr 14, 2020Updated 6 years ago
- workflow to analysis of whole-exome-sequencing☆13Feb 12, 2020Updated 6 years ago
- Predicting the effect of mutations on protein stability using a simple orientational potential.☆20Jul 5, 2024Updated 2 years ago
- A transformer model to predict pathogenic mutations☆12Jun 25, 2025Updated last year
- ☆15Jun 7, 2022Updated 4 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- DE-STRESS is a model evaluation pipeline that aims to make protein design more reliable and accessible.☆31Mar 4, 2025Updated last year
- ☆17Jun 2, 2024Updated 2 years ago
- A project - tutorial. Differential expression of RNAseq raw counts data using a Real world dataset in R. Packages covered 'DESeq2' and 'E…☆14Nov 18, 2022Updated 3 years ago
- ProteinReDiff: Complex-based ligand-binding proteins redesign by equivariant diffusion-based generative models☆39Nov 25, 2024Updated last year
- GRACE: Generative Renaissance in Artificial Computational Enzyme Design☆19Jan 8, 2025Updated last year
- Jupyter notebook repository for reproducing analysis in "DNA Methylation Landscape of the Mouse Brain at Single-Cell Resolution"☆14Apr 1, 2020Updated 6 years ago
- protein docking stuff☆58Apr 2, 2026Updated 5 months ago
- ☆37Sep 21, 2023Updated 3 years ago
- predict stability change upon mutation☆32Jun 28, 2024Updated 2 years ago
- Serverless GPU API endpoints on Runpod - Get Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- Course website for Johns Hopkins BSPH Statistical Computing (Biostatistics 140.776) in Fall 2022☆18Oct 20, 2022Updated 3 years ago
- Tool(s) for cleaning, munging and analysing PDB files for structural bioinformatics analysis.☆15May 29, 2019Updated 7 years ago
- ☆30May 24, 2024Updated 2 years ago
- Constraint-based Metabolic Modeling Course☆12Jul 25, 2022Updated 4 years ago
- Utility scripts to generate and evaluate parametrically guided beta barrel protein backbone structures.☆13Nov 14, 2025Updated 10 months ago
- ☆20Apr 16, 2024Updated 2 years ago
- Bayesian Optimization for protein design and mining☆28Jul 2, 2026Updated 2 months ago
- Cross-protein transfer learning for variant effect prediction☆21Sep 13, 2023Updated 3 years ago
- ProteinDesign with RFdiffusion and ProteinMPNN/LigandMPNN☆25Mar 6, 2025Updated last year
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Image classification using SVM, KNN, Bayes, Adaboost, Random Forest and CNN.Extracting features and reducting feature dimension using T-S…☆13Aug 12, 2020Updated 6 years ago
- A collection of molecular modelling tools for UCSF Chimera☆18Mar 26, 2019Updated 7 years ago
- ☆103Jul 24, 2026Updated 2 months ago
- A tutorial on cobrapy☆10Sep 1, 2026Updated 3 weeks ago
- Material from papers from KULL centre☆71May 29, 2024Updated 2 years ago
- ☆11Mar 28, 2024Updated 2 years ago
- Software for the analysis and visualization of site-saturation mutagenesis experiments☆19Apr 21, 2023Updated 3 years ago