ShahidIqb / PROST
A tool for predicting the effects of missense mutations on protein stability changes upon missense mutation using protein sequence only. PROST uses colab AlhpaFold2 for the prediction of pdb struture from FASTA sequence.
☆22Updated last year
Alternatives and similar repositories for PROST:
Users that are interested in PROST are comparing it to the libraries listed below
- ☆13Updated 4 months ago
- Implementation of Nvidia's NeuralPlexer, for end-to-end differentiable design of functional small-molecules and ligand-binding proteins, …☆50Updated last year
- ☆20Updated 8 months ago
- Predict protein thermostability with ML☆18Updated 7 months ago
- Code for ICML 2023 paper "Reprogramming Pretrained Language Models for Antibody Sequence Infilling"☆23Updated last year
- predict stability change upon mutation☆27Updated 8 months ago
- Code for "A Deep Learning Framework for Flexible Docking and Design"☆16Updated 2 years ago
- ML-guided enzyme engineering☆57Updated 2 weeks ago
- LoRA for protein language models☆36Updated last year
- Code and software used to design de novo protein nanomachines. Supplementary material for "Computational design of nanoscale rotational m…☆10Updated 3 years ago
- In-silico design pipeline for evaluating protein structure diffusion models.☆22Updated 9 months ago
- Predicting the effect of mutations on protein stability using a simple orientational potential.☆16Updated 8 months ago
- Iterative masking algorithm on MSA Transformer to generate synthetic sequences☆25Updated last year
- Open source code for AlphaFold to extract protein embeddings☆26Updated 3 years ago
- Inpainting protein sequence and structure☆12Updated last year
- PLM-interact: extending protein language models to predict protein-protein interactions.☆19Updated 3 months ago
- 🎈 Structure-aware adapter fine-tuning PLMs, with high training speed and impressive performance (Journal of Chemical Information and Mod…☆21Updated 2 months ago
- SE(3)-equivariant point cloud networks for virtual screening☆20Updated last year
- ☆28Updated 2 weeks ago
- This repository contains code for the paper: "Tertiary motifs as building blocks for the design of protein-binding peptides"☆15Updated last year
- ☆54Updated this week
- Implementation of Protein Invariant Point Packer (PIPPack)☆33Updated 9 months ago
- ☆11Updated 3 months ago
- RNA, mRNA, DNA, Peptide, Protein, Antibody and Complex | Folding☆28Updated 3 weeks ago
- The software system of improving AlphaFold2- and AlphaFold-Multimer-based protein tertiary & quaternary structure prediction. It was deve…☆28Updated last year
- Model for predicting micro-millisecond motions from protein sequence and/or structure☆34Updated this week
- Converts AlphaFold distograms into distance matrices and saves them into a number of formats☆11Updated 2 years ago
- ☆25Updated 2 years ago
- protein backbone refinement☆15Updated 6 months ago
- Fast deep learning methods for large-scale protein-protein interaction screening☆35Updated 5 months ago