Implementation and replication of ProGen, Language Modeling for Protein Generation, in Jax
☆114Sep 8, 2021Updated 4 years ago
Alternatives and similar repositories for progen
Users that are interested in progen are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Official release of the ProGen models☆698Aug 4, 2023Updated 2 years ago
- Protein Language Model☆124Jan 15, 2024Updated 2 years ago
- [ICLR 2022] OntoProtein: Protein Pretraining With Gene Ontology Embedding☆151Mar 10, 2025Updated last year
- Implementation of trRosetta and trDesign for Pytorch, made into a convenient package, for protein structure prediction and design☆83Aug 27, 2021Updated 4 years ago
- A denoising diffusion probabilistic model (DDPM) tailored for conditional generation of protein distograms☆144Apr 20, 2022Updated 3 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- A collection of tasks to probe the effectiveness of protein sequence representations in modeling aspects of protein design☆120Mar 3, 2026Updated last month
- Protein design and variant prediction using autoregressive generative models☆120Jan 23, 2024Updated 2 years ago
- Implementation of Chroma, generative models of protein using DDPM and GNNs, in Pytorch☆160Dec 27, 2022Updated 3 years ago
- Repository for the paper "Optimal design of stochastic DNA synthesis protocols based on generative sequence models" (Weinstein et al., AI…☆37Feb 17, 2022Updated 4 years ago
- Official code repository of "BERTology Meets Biology: Interpreting Attention in Protein Language Models."☆305May 1, 2025Updated 11 months ago
- Tasks Assessing Protein Embeddings (TAPE), a set of five biologically relevant semi-supervised learning tasks spread across different dom…☆736Dec 11, 2022Updated 3 years ago
- Implementation of ProteinBERT in Pytorch☆164Aug 10, 2021Updated 4 years ago
- ProtTrans is providing state of the art pretrained language models for proteins. ProtTrans was trained on thousands of GPUs from Summit a…☆1,296May 22, 2025Updated 10 months ago
- Implementation of Denoising Diffusion for protein design, but using the new Equiformer (successor to SE3 Transformers) with some addition…☆57Dec 27, 2022Updated 3 years ago
- Deploy open-source AI quickly and easily - Bonus Offer • AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.
- Code and data to reproduce analyses in Biswas et al. (2020) "Low-N protein engineering with data-efficient deep learning".☆61Apr 8, 2021Updated 5 years ago
- Fragment Graphical Variational AutoEncoding for Screening and Generating Molecules☆14Nov 21, 2022Updated 3 years ago
- A generative latent variable model for biological sequence families.☆250Mar 15, 2022Updated 4 years ago
- Repository for publicly available deep learning models developed in Rosetta community☆123Sep 18, 2021Updated 4 years ago
- Code for Fold2Seq paper from ICML 2021☆50May 25, 2022Updated 3 years ago
- DistilProtBert implementation, a distilled version of ProtBert model.☆15Sep 21, 2022Updated 3 years ago
- bio-transformers is a wrapper on top of the ESM/Protbert model, trained on millions on proteins and used to predict embeddings.☆155Oct 11, 2023Updated 2 years ago
- RITA is a family of autoregressive protein models, developed by LightOn in collaboration with the OATML group at Oxford and the Debora Ma…☆100Jan 24, 2023Updated 3 years ago
- PyTorch implementation for our paper "Proximal Exploration for Model-guided Protein Sequence Design"☆37Aug 7, 2023Updated 2 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- CLASP - Contrastive Language-Aminoacid Sequence Pretraining☆142Sep 17, 2021Updated 4 years ago
- A repository with exploration into using transformers to predict DNA ↔ transcription factor binding☆88Jun 2, 2022Updated 3 years ago
- ☆27Feb 10, 2024Updated 2 years ago
- ☆135Sep 14, 2022Updated 3 years ago
- Protein hallucination and inpainting with RoseTTAFold☆281Mar 30, 2023Updated 3 years ago
- PaccMann models for protein language modeling☆43Nov 10, 2021Updated 4 years ago
- Evolutionary couplings from protein and RNA sequence alignments☆301Oct 23, 2025Updated 5 months ago
- a Transformer-based neural network for generating highly optimized protein sequences called Regularized Latent Space Optimization (RELSO)☆90Jul 6, 2023Updated 2 years ago
- ☆135Aug 8, 2024Updated last year
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- Enzyme datasets used to benchmark enzyme-substrate promiscuity models☆43Jun 28, 2021Updated 4 years ago
- This repository is for the paper "A generative nonparametric Bayesian model for whole genomes"☆15Jun 7, 2023Updated 2 years ago
- Gibbs sampling for generating protein sequences☆58Jan 17, 2025Updated last year
- Realizing private and practical pharmacological collaboration☆15Oct 19, 2018Updated 7 years ago
- Evolutionary Scale Modeling (esm): Pretrained language models for proteins☆4,034Feb 7, 2024Updated 2 years ago
- Listing of papers about machine learning for proteins.☆1,697May 31, 2024Updated last year
- UniRep model, usage, and examples.☆362Mar 1, 2026Updated last month