Alternatives and similar repositories for progen:

Users that are interested in progen are comparing it to the libraries listed below

• OATML-Markslab / Tranception
  Official repository for the paper "Tranception: Protein Fitness Prediction with Autoregressive Transformers and Inference-time Retrieval"
  ☆149Updated last year
• lucidrains / chroma-pytorch
  Implementation of Chroma, generative models of protein using DDPM and GNNs, in Pytorch
  ☆158Updated 2 years ago
• lucidrains / ddpm-ipa-protein-generation
  Implementation of the DDPM + IPA (invariant point attention) for protein generation, as outlined in the paper "Protein Structure and Sequ…
  ☆88Updated 2 years ago
• J-SNACKKB / FLIP
  A collection of tasks to probe the effectiveness of protein sequence representations in modeling aspects of protein design
  ☆97Updated 5 months ago
• AbSciBio / unlocking-de-novo-antibody-design
  ☆115Updated 7 months ago
• elttaes / Revisiting-PLMs
  Exploring Evolution-aware & free protein language models as protein function predictors
  ☆63Updated 5 months ago
• lightonai / RITA
  RITA is a family of autoregressive protein models, developed by LightOn in collaboration with the OATML group at Oxford and the Debora Ma…
  ☆96Updated 2 years ago
• Graylab / IgLM
  Generative Language Modeling for Antibody Design
  ☆142Updated 5 months ago
• rmrao / msa-transformer
  MSA Transformer reproduction code
  ☆77Updated 3 years ago
• amyxlu / cheap-proteins
  Joint embedding of protein sequence and structure with discrete and continuous compressions of protein folding model latent spaces. http:…
  ☆112Updated 3 months ago
• OpenBioML / protein-lm-scaling
  ☆57Updated 11 months ago
• oxpig / AbLang
  AbLang: A language model for antibodies
  ☆137Updated last year
• HeliXonProtein / binding-ddg-predictor
  open source repository
  ☆136Updated last year
• lucidrains / tr-rosetta-pytorch
  Implementation of trRosetta and trDesign for Pytorch, made into a convenient package, for protein structure prediction and design
  ☆79Updated 3 years ago
• aqlaboratory / genie
  De Novo Protein Design by Equivariantly Diffusing Oriented Residue Clouds
  ☆178Updated 11 months ago
• google-deepmind / nuclease_design
  ML-guided enzyme engineering
  ☆57Updated 2 weeks ago
• ProteinDesignLab / protein_seq_des
  Code for our paper "Protein sequence design with a learned potential"
  ☆80Updated last year
• melobio / EvoPlay
  ☆70Updated last year
• DeepGraphLearning / PEER_Benchmark
  PEER Benchmark, appear at NeurIPS 2022 Dataset and Benchmark Track (https://arxiv.org/abs/2206.02096)
  ☆88Updated 2 years ago
• biolists / biodiffusion
  A list of manuscripts/tools using diffusion on biological enttieis
  ☆96Updated last year
• THUDM / ProteinLM
  Protein Language Model
  ☆116Updated last year
• dqwang122 / EATLM
  Code for 'On Pre-trained Language Models For Antibody'
  ☆33Updated 2 years ago
• Immortals-33 / Scaffold-Lab
  A comprehensive benchmark on the performances of multiple protein backbone generative models.
  ☆53Updated this week
• amyxlu / plaid
  All-atom protein generation using latent diffusion, with compositional function and taxonomic prompts. http://bit.ly/plaid-proteins
  ☆71Updated 2 weeks ago
• Eikor / InstructPLM
  The first large protein language model trained follows structure instructions.
  ☆75Updated 9 months ago
• prescient-design / cortex
  A Modular Architecture for Deep Learning Systems
  ☆40Updated this week
• hypnopump / rgn2-replica
  Replication attempt for the Protein Folding Model described in https://www.biorxiv.org/content/10.1101/2021.08.02.454840v1
  ☆37Updated 2 years ago
• ketatam / DiffDock-PP
  Implementation of DiffDock-PP: Rigid Protein-Protein Docking with Diffusion Models in PyTorch (ICLR 2023 - MLDD Workshop)
  ☆202Updated last year
• bozhenhhu / A-Review-of-pLMs-and-Methods-for-Protein-Structure-Prediction
  ☆40Updated 2 years ago