dohlee / antiberty-pytorchLinks
An unofficial re-implementation of AntiBERTy, an antibody-specific protein language model, in PyTorch.
☆26Updated last year
Alternatives and similar repositories for antiberty-pytorch
Users that are interested in antiberty-pytorch are comparing it to the libraries listed below
Sorting:
- Enzyme datasets used to benchmark enzyme-substrate promiscuity models☆40Updated 4 years ago
- Fork of matteofigliuzzi/bmDCA repository for Boltzmann-machine Direct Coupling Analysis (bmDCA).☆35Updated 5 years ago
- ☆47Updated last year
- An antibody-specific language model focusing on NGL prediction☆25Updated 10 months ago
- Tool for modelling the CDRs of antibodies☆50Updated 3 years ago
- ☆51Updated 2 years ago
- Active Learning-Assisted Directed Evolution for Protein Engineering☆78Updated 3 months ago
- An open-source deep learning framework for data mining of protein-protein interfaces or single-residue variants.☆57Updated last year
- pyFoldX: python bindings for FoldX.☆54Updated 4 years ago
- ☆23Updated 4 years ago
- ☆74Updated last year
- ☆21Updated 3 years ago
- Machine learning-driven antibody design☆63Updated 2 years ago
- A convolutional neural network model to predict spatial charge map (SCM) score, a molecular dynamics simulation-based model to predict an…☆28Updated 3 years ago
- Graphinity: Equivariant Graph Neural Network Architecture for Predicting Change in Antibody-Antigen Binding Affinity☆57Updated 6 months ago
- ☆73Updated 10 months ago
- Machine learning models for antibody sequences in PyTorch☆41Updated 4 years ago
- A dataset for training and benchmarking deep learning models for RNA structure prediction☆62Updated 2 weeks ago
- The Patent and Literature Antibody Database (PLAbDab): an evolving reference set of functionally diverse, literature-annotated antibody s…☆31Updated last year
- An antibody-specific language model focusing on NGL prediction☆35Updated last year
- ☆109Updated 2 years ago
- ☆74Updated 5 years ago
- Antibody paratope prediction using Graph Neural Networks with minimal feature vectors☆37Updated 2 years ago
- Generating and scoring novel enzyme sequences with a variety of models and metrics☆72Updated last month
- Public repository describing training and testing of AntiBERTa.☆61Updated 2 years ago
- Physical energy function for protein sequence design☆36Updated 2 years ago
- ☆20Updated 4 years ago
- ☆35Updated 4 years ago
- ☆37Updated 2 years ago
- A complete, open-source, end-to-end re-implementation of the Church Lab's low-N eUniRep in silico protein engineering pipeline presented …☆27Updated 5 years ago