dohlee / antiberty-pytorchView external linksLinks
An unofficial re-implementation of AntiBERTy, an antibody-specific protein language model, in PyTorch.
☆26Mar 21, 2024Updated last year
Alternatives and similar repositories for antiberty-pytorch
Users that are interested in antiberty-pytorch are comparing it to the libraries listed below
Sorting:
- Antibody Langauge Ensemble Fusion - fuses antibody structural ensemble and language representation for property prediction☆13Apr 23, 2024Updated last year
- Antibody-specific masked language model☆67Jul 16, 2023Updated 2 years ago
- ☆28Aug 26, 2025Updated 5 months ago
- ☆12Dec 2, 2024Updated last year
- Features Based Conformational Clustering of MD trajectories. See details at:☆10Nov 20, 2025Updated 2 months ago
- ☆10May 22, 2024Updated last year
- Synthetic Accessibility via Fragment Assembly Generation☆17Feb 1, 2026Updated last week
- CREMP: Conformer-Rotamer Ensembles of Macrocyclic Peptides for Machine Learning☆20Aug 13, 2024Updated last year
- ☆45Apr 1, 2025Updated 10 months ago
- ☆12Mar 28, 2025Updated 10 months ago
- Code for ICML 2023 paper "Reprogramming Pretrained Language Models for Antibody Sequence Infilling"☆24Sep 18, 2025Updated 4 months ago
- Code for humanization of antibody and nanobody☆74Aug 28, 2025Updated 5 months ago
- ☆25May 19, 2025Updated 8 months ago
- ☆12Apr 8, 2025Updated 10 months ago
- ☆136Aug 8, 2024Updated last year
- A new python package to visualize molecules in dots hover☆13Feb 15, 2024Updated last year
- p-IgGen: A Generative Paired Antibody Language Model☆13May 6, 2025Updated 9 months ago
- Graphinity: Equivariant Graph Neural Network Architecture for Predicting Change in Antibody-Antigen Binding Affinity☆13Jul 9, 2025Updated 7 months ago
- Fast, accurate antibody structure prediction from deep learning on massive set of natural antibodies☆403Sep 3, 2023Updated 2 years ago
- ☆13Jul 15, 2024Updated last year
- This repository includes the slides and the practicals for the course of Structural Bioinformatics of the MBB/QB degrees at the Universit…☆91Jan 29, 2026Updated 2 weeks ago
- ☆51Aug 21, 2023Updated 2 years ago
- Course materials for the IBioIC Introduction to Bioinformatics training course☆12Jun 4, 2017Updated 8 years ago
- ☆12Oct 9, 2024Updated last year
- [Neurips 2025] Official Implementation of ConfRover models☆18Feb 3, 2026Updated last week
- Foundation model-driven lab☆14Apr 13, 2025Updated 10 months ago
- ☆12Feb 17, 2023Updated 2 years ago
- MiniMol is a 10M-parameters molecular fingerprinting model pre-trained on >3300 biological and quantum tasks☆37May 29, 2025Updated 8 months ago
- Fitness landscapes for antibodies☆151Dec 23, 2025Updated last month
- All in one Structure-Based Virtual Screening workflow based on the concept of consensus docking.☆51Nov 5, 2025Updated 3 months ago
- This repo contains the codes for our paper "End-to-End Full-Atom Antibody Design"☆125Feb 26, 2025Updated 11 months ago
- An antibody-specific language model focusing on NGL prediction☆36Aug 22, 2024Updated last year
- ☆11Aug 26, 2024Updated last year
- The practical material from the course Biotech 7005: Bioinformatics and Systems Modelling☆18Oct 28, 2019Updated 6 years ago
- An Image-enhanced Molecular Graph Representation Learning Framework (IJCAI 2024)☆17Dec 24, 2024Updated last year
- P2PXML: Deep Geometric Framework to Predict Antibody-Antigen Binding Affinity☆13Nov 8, 2025Updated 3 months ago
- Matrix factorization and deep learning for molecular property prediction☆13Apr 4, 2019Updated 6 years ago
- molecular plots in Jupyter, powererd by Blender Geometry Nodes☆55Mar 27, 2024Updated last year
- SubPEx (Sub-Pocket Explorer) is a tool to enhance ensemble (multiple-receptor/relaxed-complex) virtual screening. It uses weighted ensemb…☆18Jun 30, 2025Updated 7 months ago