dohlee / antiberty-pytorchLinks
An unofficial re-implementation of AntiBERTy, an antibody-specific protein language model, in PyTorch.
☆24Updated last year
Alternatives and similar repositories for antiberty-pytorch
Users that are interested in antiberty-pytorch are comparing it to the libraries listed below
Sorting:
- ☆69Updated 4 years ago
- ☆35Updated 3 years ago
- ☆47Updated last year
- ☆23Updated 6 months ago
- Code for the paper "DLAB - Deep learning methods for structure-basedvirtual screening of antibodies"☆31Updated 2 years ago
- Graphinity: Equivariant Graph Neural Network Architecture for Predicting Change in Antibody-Antigen Binding Affinity☆40Updated last week
- Machine learning models for antibody sequences in PyTorch☆39Updated 4 years ago
- Antibody paratope prediction using Graph Neural Networks with minimal feature vectors☆37Updated 2 years ago
- Tool for modelling the CDRs of antibodies☆49Updated 2 years ago
- KA-Search: Rapid and exhaustive sequence identity search of known antibodies☆22Updated last year
- Generating and scoring novel enzyme sequences with a variety of models and metrics☆69Updated 3 weeks ago
- ☆20Updated 3 years ago
- A dataset for training and benchmarking deep learning models for RNA structure prediction☆56Updated 6 months ago
- A convolutional neural network model to predict spatial charge map (SCM) score, a molecular dynamics simulation-based model to predict an…☆28Updated 2 years ago
- Public repository describing training and testing of AntiBERTa.☆59Updated 2 years ago
- Enzyme datasets used to benchmark enzyme-substrate promiscuity models☆35Updated 4 years ago
- pyFoldX: python bindings for FoldX.☆48Updated 3 years ago
- Exploring the conformational ensembles of protein-protein complexes with transformer-based generative neural networks☆29Updated last year
- ☆66Updated 3 years ago
- A Python 3 version of the protein descriptor package propy☆42Updated 2 years ago
- dMaSIF implementation for google colab☆32Updated 2 years ago
- An antibody-specific language model focusing on NGL prediction☆29Updated 10 months ago
- The Patent and Literature Antibody Database (PLAbDab): an evolving reference set of functionally diverse, literature-annotated antibody s…☆25Updated last year
- Code and data used in https://doi.org/10.1101/2021.08.01.454656☆53Updated 3 years ago
- ☆70Updated 3 months ago
- Bioinformatics and Cheminformatics protocols for peptide analysis☆42Updated 2 years ago
- Active Learning-Assisted Directed Evolution for Protein Engineering☆61Updated 7 months ago
- Fork of matteofigliuzzi/bmDCA repository for Boltzmann-machine Direct Coupling Analysis (bmDCA).☆35Updated 4 years ago
- DDGScan: an integrated parallel workflow for the in silico point mutation scan of protein☆48Updated last year
- Paratope Prediction using Deep Learning☆59Updated 2 years ago