gersteinlab / ThermoNet
ThermoNet is a computational method for quantitative prediction of the impact of single-point mutations on protein thermodynamic stability. The core algorithm of ThermoNet is an ensemble of deep 3D convolutional neural networks.
☆114Updated last year
Alternatives and similar repositories for ThermoNet:
Users that are interested in ThermoNet are comparing it to the libraries listed below
- ☆123Updated last year
- AbLang: A language model for antibodies☆137Updated last year
- A collection of tasks to probe the effectiveness of protein sequence representations in modeling aspects of protein design☆97Updated 6 months ago
- Predict the structure of immune receptor proteins☆133Updated 2 months ago
- Protein-ligand structure prediction☆213Updated 8 months ago
- Repository for publicly available deep learning models developed in Rosetta community☆111Updated 3 years ago
- Joint embedding of protein sequence and structure with discrete and continuous compressions of protein folding model latent spaces. http:…☆114Updated 3 months ago
- ☆115Updated 5 months ago
- GNN trained to predict changes in thermodynamic stability for protein point mutants☆155Updated last month
- A machine-learning package for navigating combinatorial protein fitness landscapes.☆124Updated 3 years ago
- Geometric deep learning method to predict protein binding interfaces from a protein structure.☆124Updated last year
- A compilation of deep learning methods for protein design☆97Updated 2 years ago
- Tutorials, cheat sheets, and other resources for computational methods for protein design.☆110Updated last year
- ☆105Updated 2 years ago
- Improved antibody structure-based design using inverse folding☆105Updated 2 weeks ago
- MaSIF-neosurf: surface-based protein design for ternary complexes.☆108Updated last week
- ☆91Updated 5 months ago
- PINDER: The Protein INteraction Dataset and Evaluation Resource☆110Updated 4 months ago
- Code for ColabDock paper☆137Updated 5 months ago
- Deep learning models and structure realization scripts for the DeepAb antibody structure prediction method.☆159Updated 2 years ago
- Generative Language Modeling for Antibody Design☆144Updated 5 months ago
- Universal Structure Alignment of Monomeric and Complex Structure of Nucleic Acids and Proteins☆132Updated 2 months ago
- Official code repository for the paper "ProteinNPT: Improving Protein Property Prediction and Design with Non-Parametric Transformers"☆110Updated 2 weeks ago
- Protein folding in Pymol☆108Updated 2 months ago
- trRosetta for protein design☆177Updated 3 years ago
- ☆156Updated 2 weeks ago
- ☆100Updated 2 years ago
- Convenience Python APIs for antibody numbering using ANARCI☆94Updated 2 months ago
- Fitness landscapes for antibodies☆67Updated 2 months ago
- Official repository of EnzymeFlow☆82Updated 3 months ago