jonathanking / protein-transformer
Predicting protein structure through sequence modeling
☆108Updated 4 years ago
Related projects ⓘ
Alternatives and complementary repositories for protein-transformer
- Attempt at reproduction of AlphaFold2☆91Updated 3 weeks ago
- DeeplyTough: Learning Structural Comparison of Protein Binding Sites☆156Updated last year
- open source repository☆125Updated 11 months ago
- Generative Models for Graph-Based Protein Design☆262Updated 3 years ago
- A package to predict protein inter-residue geometries from sequence data☆206Updated 3 years ago
- Code for our paper "Protein sequence design with a learned potential"☆77Updated last year
- Note that current version does not include search of very large metagenome data. For some proteins, metagenome data is important. We will…☆99Updated 2 years ago
- EquiDock: geometric deep learning for fast rigid 3D protein-protein docking☆232Updated last year
- trRosetta for protein design☆172Updated 3 years ago
- ☆126Updated 2 years ago
- AbLang: A language model for antibodies☆128Updated last year
- PyTorch library of layers acting on protein representations☆117Updated 4 months ago
- Protein-compound affinity prediction through unified RNN-CNN☆137Updated 4 months ago
- A collection of tasks to probe the effectiveness of protein sequence representations in modeling aspects of protein design☆94Updated last month
- Geometric deep learning method to predict protein binding interfaces from a protein structure.☆108Updated last year
- GREMLIN - learn MRF/potts model from input multiple sequence alignment! Implementation now available in C++ and Tensorflow/Python!☆53Updated 2 years ago
- ☆118Updated last year
- Variational autoencoder for protein sequences - add metal binding sites and generate sequences for novel topologies☆80Updated last year
- PaccMann models for protein language modeling☆40Updated 3 years ago
- LM-GVP: A Generalizable Deep Learning Framework for Protein Property Prediction from Sequence and Structure☆50Updated 8 months ago
- Graph Network for protein-protein interface☆117Updated 8 months ago
- Repository for publicly available deep learning models developed in Rosetta community☆107Updated 3 years ago
- Database of Interacting Protein Structures (DIPS)☆95Updated 9 months ago
- Deep generative models of 3D grids for structure-based drug discovery☆225Updated last year
- ☆195Updated last year
- Deep residual neural network for protein contact/distance prediction developed by Xu group☆77Updated 4 years ago
- Implementation of trRosetta and trDesign for Pytorch, made into a convenient package, for protein structure prediction and design☆80Updated 3 years ago
- Official repository for the paper "Tranception: Protein Fitness Prediction with Autoregressive Transformers and Inference-time Retrieval"☆138Updated last year
- Geometric Vector Perceptron --- a rotation-equivariant GNN for learning from biomolecular structure☆129Updated 3 years ago
- Source code for "Learning protein sequence embeddings using information from structure" - ICLR 2019☆258Updated 3 years ago