Alternatives and similar repositories for DeepLoc-2.0

Users that are interested in DeepLoc-2.0 are comparing it to the libraries listed below

• idrblab / AnnoPRO
  Feature map and function annotation of Proteins
  ☆33Updated last year
• graph-part / graph-part
  GraphPart, a data partitioning method for ML on biological sequences
  ☆29Updated last year
• tymor22 / tm-vec
  ☆68Updated 11 months ago
• walterlab-HMS / SPOC
  Code repository for the SPOC tool for scoring binary AF-M predicitons.
  ☆13Updated 3 months ago
• debbiemarkslab / EVmutation
  Mutation effects predicted from sequence co-variation
  ☆68Updated 7 years ago
• fteufel / signalp-6.0
  Multi-class signal peptide prediction and structure decoding model.
  ☆91Updated 6 months ago
• labstructbioinf / pLM-BLAST
  Detection of remote homology by comparison of protein language model representations
  ☆54Updated 8 months ago
• Rostlab / ConSurf
  Evolutionary conservation estimation of residues or nucleotides
  ☆47Updated 3 years ago
• ml4bio / Dense-Homolog-Retrieval
  Nature Biotechnology: Ultra-fast, sensitive detection of protein remote homologs using deep dense retrieval
  ☆118Updated 11 months ago
• brianhie / evolocity
  Evolutionary velocity with protein language models
  ☆94Updated last year
• Shunsuke-1994 / rfamgen
  Code repository of "Deep generative design of RNA family sequences"
  ☆35Updated last year
• psipred / merizo_search
  Fast protein domain structure embedding+search tool
  ☆25Updated 3 months ago
• TattaBio / gLM2
  ☆70Updated 10 months ago
• maovshao / PLMSearch
  PLMSearch enables accurate and fast homologous protein search with only sequences as input
  ☆73Updated 8 months ago
• frankligy / DeepImmuno
  Deep-learning empowered prediction and generation of immunogenic epitopes for T cell immunity
  ☆72Updated 2 years ago
• ntranoslab / esm-variants
  ☆76Updated last year
• patrickbryant1 / SpeedPPI
  Rapid protein-protein interaction network creation from multiple sequence alignments with Deep Learning
  ☆91Updated last year
• flatironinstitute / deepblast
  Neural Networks for Protein Sequence Alignment
  ☆125Updated 9 months ago
• timkartar / DeepPBS
  Geometric deep learning of protein–DNA binding specificity
  ☆76Updated 5 months ago
• y-hwang / gLM
  Genomic language model predicts protein co-regulation and function
  ☆81Updated 5 months ago
• idptools / sparrow
  Next generation sequence parameter library for proteins
  ☆34Updated last month
• jbloomlab / SARS-CoV-2-RBD_DMS
  Deep mutational scanning of the receptor-binding domain of SARS-CoV-2 Spike
  ☆45Updated 3 years ago
• steineggerlab / colabfold-protocol
  ColabFold protocol
  ☆52Updated 10 months ago
• CongLabCode / DPAM
  A domain parser for Alphafold models
  ☆40Updated last year
• JiangBioLab / DLpTCR
  Predicting immunogenic peptide recognized by TCR through ensemble deep learning
  ☆16Updated last year
• SNU-CSSB / RF2-Lite
  ☆30Updated last year
• clairemcwhite / vcmsa
  ☆30Updated last year
• churchlab / low-N-protein-engineering
  Code and data to reproduce analyses in Biswas et al. (2020) "Low-N protein engineering with data-efficient deep learning".
  ☆60Updated 4 years ago
• ewbell94 / PEPPI
  Pipeline for protein-protein interaction prediction
  ☆23Updated 3 years ago
• maovshao / PLMAlign
  PLMAlign utilizes per-residue embeddings as input to obtain specific alignments and more refined similarity
  ☆20Updated 8 months ago