Alternatives and similar repositories for DeepLoc-2.0

Users that are interested in DeepLoc-2.0 are comparing it to the libraries listed below

• idptools / sparrow
  Next generation sequence parameter library for proteins
  ☆38Updated last month
• idrblab / AnnoPRO
  Feature map and function annotation of Proteins
  ☆34Updated last year
• FPPGroup / CodonBERT
  CodonBert: a BERT-based architecture tailored for codon optimization using the cross-attention mechanism.
  ☆41Updated last year
• steineggerlab / colabfold-protocol
  ColabFold protocol
  ☆56Updated last year
• ml4bio / Dense-Homolog-Retrieval
  Nature Biotechnology: Ultra-fast, sensitive detection of protein remote homologs using deep dense retrieval
  ☆121Updated last year
• fteufel / signalp-6.0
  Multi-class signal peptide prediction and structure decoding model.
  ☆102Updated last year
• Rostlab / ConSurf
  Evolutionary conservation estimation of residues or nucleotides
  ☆57Updated 3 years ago
• labstructbioinf / pLM-BLAST
  Detection of remote homology by comparison of protein language model representations
  ☆61Updated last year
• timkartar / DeepPBS
  Geometric deep learning of protein–DNA binding specificity
  ☆76Updated 10 months ago
• graph-part / graph-part
  GraphPart, a data partitioning method for ML on biological sequences
  ☆33Updated 2 years ago
• frankligy / DeepImmuno
  Deep-learning empowered prediction and generation of immunogenic epitopes for T cell immunity
  ☆75Updated 2 years ago
• y-hwang / gLM
  Genomic language model predicts protein co-regulation and function
  ☆86Updated 10 months ago
• ntranoslab / esm-variants
  ☆86Updated 2 years ago
• maovshao / PLMSearch
  PLMSearch enables accurate and fast homologous protein search with only sequences as input
  ☆78Updated 5 months ago
• tymor22 / tm-vec
  ☆76Updated last year
• debbiemarkslab / EVmutation
  Mutation effects predicted from sequence co-variation
  ☆73Updated 8 years ago
• brianhie / evolocity
  Evolutionary velocity with protein language models
  ☆97Updated 2 months ago
• KarchinLab / bigmhc
  BigMHC predicts MHC-I (neo)epitope presentation and immunogenicity
  ☆60Updated last month
• a96123155 / UTR-LM
  ☆95Updated last year
• TattaBio / gLM2
  ☆79Updated last year
• Shunsuke-1994 / rfamgen
  Code repository of "Deep generative design of RNA family sequences"
  ☆40Updated 3 months ago
• MIDIfactory / AlphaFastPPi
  Fast AlphaFold-Multimer based pipeline for Protein-Protein Interaction (PPI) screening
  ☆39Updated last year
• OATML-Markslab / EVEscape
  Official repository for the paper "Learning from pre-pandemic data to forecast viral antibody escape"
  ☆70Updated 2 years ago
• jbloomlab / SARS-CoV-2-RBD_DMS
  Deep mutational scanning of the receptor-binding domain of SARS-CoV-2 Spike
  ☆46Updated 3 years ago
• pgmikhael / protgps
  ☆99Updated 7 months ago
• walterlab-HMS / SPOC
  Code repository for the SPOC tool for scoring binary AF-M predicitons.
  ☆15Updated 9 months ago
• CongLabCode / DPAM
  A domain parser for Alphafold models
  ☆46Updated 2 years ago
• patrickbryant1 / SpeedPPI
  Rapid protein-protein interaction network creation from multiple sequence alignments with Deep Learning
  ☆90Updated last year
• churchlab / low-N-protein-engineering
  Code and data to reproduce analyses in Biswas et al. (2020) "Low-N protein engineering with data-efficient deep learning".
  ☆60Updated 4 years ago
• kaistsystemsbiology / DeepProZyme
  DeepECtransformer
  ☆29Updated 2 years ago