JaneliaSciComp / JaneliaDataStandardsLinks
A pilot experiment to dissminate information about Janelia's biomaging data formats.
☆12Updated 10 months ago
Alternatives and similar repositories for JaneliaDataStandards
Users that are interested in JaneliaDataStandards are comparing it to the libraries listed below
Sorting:
- 3D/4D volumetric rendering of microscopy data☆26Updated last month
- Pydantic models for OME-NGFF☆24Updated 3 months ago
- Project planning and material repository for the 2024 challenge to generate 1 PB of OME-Zarr data☆20Updated 2 months ago
- Use ImageJ functionality from napari☆32Updated 2 months ago
- ☆37Updated last week
- ImageJ convenience layer for N5☆19Updated last month
- Acquire: a multi-camera video streaming software focusing on microscopy☆23Updated last year
- Create movies from series of key-frames in napari.☆38Updated 4 years ago
- Tools for distributed alignment of massive images☆89Updated last week
- Automated Segmentation of cellular substructures in Electron Microscopy☆18Updated 8 months ago
- A toolbox for registering / fusing / stitching large multi-view / multi-positioning image datasets in 2-3D.☆95Updated last week
- A tutorial of classical shape analysis methods☆11Updated 2 years ago
- High quality visualization for volumetric image data☆53Updated this week
- A napari plugin to load & deskew folders of lattice light sheet TIFFs☆13Updated 2 weeks ago
- FIJI plugin for tracing of curvilinear structures in volumetric microscopy datasets☆29Updated 3 weeks ago
- A short course exploring several fun and useful notebooks and Napari widgets for deep learning with SAM, Cellpose, Stardist and friends.☆18Updated last week
- Ngio is a Python library to streamline OME-Zarr image analysis workflows.☆36Updated this week
- GPU-based 3D non-rigid volumetric registration☆41Updated 3 months ago
- python tools for BigDataViewer☆22Updated 11 months ago
- A lean and kind Open Microscopy Environment (OME) Next Generation File Format (NGFF) Zarr implementation.☆55Updated 3 weeks ago
- ☆13Updated last month
- Pythonic and parallelizable I/O for N-dimensional imaging data with OME metadata☆45Updated last week
- A napari plugin to analysis point spread functions.☆13Updated 8 months ago
- GIve easy, high-level access to ome-zarr fileset☆22Updated 2 months ago
- LSTree is a digital organoid and lineage tree extraction workflow for light sheet movies.☆20Updated 2 years ago
- Browse your OMERO database from within napari.☆39Updated 2 weeks ago
- GPU-accelerated Image Processing library for C++☆16Updated this week
- PoL Bioimage Analysis Training School: GPU-Accelerated Image Analysis Track☆28Updated last year
- ☆49Updated last week
- Block-wise operations for large nD volumes☆43Updated 2 weeks ago