JaneliaSciComp / JaneliaDataStandardsLinks
A pilot experiment to dissminate information about Janelia's biomaging data formats.
☆12Updated 11 months ago
Alternatives and similar repositories for JaneliaDataStandards
Users that are interested in JaneliaDataStandards are comparing it to the libraries listed below
Sorting:
- 3D/4D volumetric rendering of microscopy data☆26Updated last month
- Pydantic models for OME-NGFF☆24Updated 3 months ago
- Project planning and material repository for the 2024 challenge to generate 1 PB of OME-Zarr data☆20Updated 3 months ago
- dask empowered fast4dreg☆15Updated last year
- A napari plugin to load & deskew folders of lattice light sheet TIFFs☆13Updated 3 weeks ago
- FIJI plugin for tracing of curvilinear structures in volumetric microscopy datasets☆29Updated last month
- ImageJ convenience layer for N5☆19Updated last month
- Browse your OMERO database from within napari.☆39Updated 3 weeks ago
- Computational workflows to assess phototoxicity in live-cell microscopy experiments☆11Updated 3 months ago
- Use ImageJ functionality from napari☆32Updated 3 months ago
- Block-wise operations for large nD volumes☆43Updated 2 weeks ago
- Acquire: a multi-camera video streaming software focusing on microscopy☆23Updated last year
- 1d plotting in napari-based canvas.☆25Updated last week
- A short course exploring several fun and useful notebooks and Napari widgets for deep learning with SAM, Cellpose, Stardist and friends.☆18Updated 3 weeks ago
- ☆49Updated 3 weeks ago
- Automated Segmentation of cellular substructures in Electron Microscopy☆18Updated 9 months ago
- A lean and kind Open Microscopy Environment (OME) Next Generation File Format (NGFF) Zarr implementation.☆55Updated this week
- An automated point-set based registration algorithm for correlative light and electron microscopy (CLEM)☆19Updated 2 months ago
- Ngio is a Python library to streamline OME-Zarr image analysis workflows.☆37Updated 2 weeks ago
- ☆42Updated 2 weeks ago
- How to use Aligning Big Brains and Atlases with Python☆14Updated 2 years ago
- Process and analyze surfaces using vedo in napari.☆25Updated last year
- python tools for BigDataViewer☆22Updated last year
- Segment images utilizing pre-trained neural networks as feature extractors☆44Updated 2 weeks ago
- GIve easy, high-level access to ome-zarr fileset☆22Updated 3 months ago
- Python libraries for loading, running and packaging bioimage.io models☆34Updated last week
- Napari training material for a workshop by the CZI funded initiatives LIBRE hub, Napari, and several amazing volunteers☆10Updated 2 years ago
- Archived: control, reconstruction, and analysis code for oblique plane microscopy.☆22Updated 9 months ago
- Create movies from series of key-frames in napari.☆38Updated 4 years ago
- ☆38Updated last year