Alternatives and similar repositories for JaneliaDataStandards

Users that are interested in JaneliaDataStandards are comparing it to the libraries listed below

• JaneliaSciComp / VVDViewer
  3D/4D volumetric rendering of microscopy data
  ☆24Updated 4 months ago
• JaneliaSciComp / pydantic-ome-ngff
  Pydantic models for OME-NGFF
  ☆24Updated this week
• saalfeldlab / n5-ij
  ImageJ convenience layer for N5
  ☆17Updated last month
• guiwitz / naparimovie
  Create movies from series of key-frames in napari.
  ☆38Updated 4 years ago
• ome / ome2024-ngff-challenge
  Project planning and material repository for the 2024 challenge to generate 1 PB of OME-Zarr data
  ☆20Updated 3 months ago
• fideus-labs / ngff-zarr
  A lean and kind Open Microscopy Environment (OME) Next Generation File Format (NGFF) Zarr implementation.
  ☆49Updated this week
• imagej / napari-imagej
  Use ImageJ functionality from napari
  ☆31Updated 3 weeks ago
• kirchhausenlab / incasem
  Automated Segmentation of cellular substructures in Electron Microscopy
  ☆18Updated 5 months ago
• imaris / ImarisWriter
  ☆38Updated last year
• clEsperanto / CLIc
  GPU-accelerated Image Processing library for C++
  ☆16Updated last week
• tlambert03 / napari-omero
  Browse your OMERO database from within napari.
  ☆38Updated 2 weeks ago
• True-North-Intelligent-Algorithms / notebooks-and-napari-widgets-for-dl
  A short course exploring several fun and useful notebooks and Napari widgets for deep learning with SAM, Cellpose, Stardist and friends.
  ☆16Updated 4 months ago
• czbiohub-sf / iohub
  Pythonic and parallelizable I/O for N-dimensional imaging data with OME metadata
  ☆39Updated this week
• ekatrukha / BigTrace
  FIJI plugin for tracing of curvilinear structures in volumetric microscopy datasets
  ☆30Updated this week
• allen-cell-animated / agave
  ☆50Updated last week
• COBA-NIH / MicroscopyForBeginnersReferenceGuide
  A Beginner's guide to microscopy, from sample prep to acquisition, image analysis, and data interpretation
  ☆28Updated last month
• bioimage-io / spec-bioimage-io
  Specification for the bioimage.io model description file.
  ☆21Updated last week
• tlambert03 / napari-ndtiffs
  A napari plugin to load & deskew folders of lattice light sheet TIFFs
  ☆13Updated 2 weeks ago
• pymmcore-plus / pymmcore-plus
  Pure python/C++ micro-manager ecosystem
  ☆42Updated last week
• constantinpape / pybdv
  python tools for BigDataViewer
  ☆22Updated 8 months ago
• ome / napari-ome-zarr
  A napari plugin for zarr backed OME-NGFF images
  ☆37Updated 2 weeks ago
• e11bio / volara
  ☆36Updated this week
• bauerdavid / napari-nD-annotator
  ☆37Updated 3 weeks ago
• BioVisionCenter / ngio
  Ngio is a Python library to streamline OME-Zarr image analysis workflows.
  ☆18Updated last week
• guiwitz / napari-convpaint
  Segment images by pixel classification based on pre-trained convolutional layer feature extraction
  ☆38Updated last week
• fmi-faim / faim-ipa
  A collection of Image Processing and Analysis (IPA) functions used at the Facility for Advanced Imaging and Microscopy (FAIM)
  ☆18Updated this week
• COSC-Lab / napari-fast4dreg
  dask empowered fast4dreg
  ☆12Updated 9 months ago
• tlambert03 / microsim
  ☆40Updated 2 weeks ago
• krentzd / napari-clemreg
  An automated point-set based registration algorithm for correlative light and electron microscopy (CLEM)
  ☆18Updated 4 months ago
• JaneliaSciComp / BigStitcher-Spark
  Running compute-intense parts of BigStitcher distributed
  ☆26Updated this week