enveda / kgem-ensembles-in-drug-discovery
Source code and data repository for "Ensembles of knowledge graph embedding models improve predictions for drug discovery"
☆20Updated last year
Alternatives and similar repositories for kgem-ensembles-in-drug-discovery:
Users that are interested in kgem-ensembles-in-drug-discovery are comparing it to the libraries listed below
- Code to accompany the "Understanding the Performance of Knowledge Graph Embeddings in Drug Discovery" manuscript (Artificial Intelligence…☆33Updated 7 months ago
- Code to accompany the "Implications of Topological Imbalance for Representation Learning on Biomedical Knowledge Graphs" (Briefings in B…☆17Updated 3 weeks ago
- This repository provides an implementation of the DTiGEMSplus tool, a network-based method for computational Drug-Target Interaction pred…☆27Updated 3 years ago
- ☆55Updated 4 years ago
- ☆16Updated 3 years ago
- ☆15Updated 6 months ago
- ☆11Updated 10 months ago
- Example code and data samples for "An experimentally validated approach to automated biological evidence generation in drug discovery usi…☆10Updated last year
- Biomedical Relation Extraction with Knowledge Graph-based Recommendations☆9Updated last year
- The Clinical Trials Knowledge Graph☆53Updated 2 years ago
- Knowledge-enhanced learned representation enriches protein sequence and SMILES drug databases with a large Knowledge Graph fused from dif…☆58Updated 4 months ago
- ☆19Updated 4 years ago
- This repository provides an implementation of the DTi2Vec tool, to identify Drug-Target interaction using network embedding and ensemble …☆12Updated 3 years ago
- Multi-Channel Deep Chemogenomic Modeling of Receptor-Ligand Binding Affinity Prediction for Drug Discovery☆27Updated 3 years ago
- StarGazer is a tool designed for rapidly assessing drug repositioning opportunities. It combines multi-source, multi-omics data with a no…☆34Updated last year
- A unified framework for predicting drug-target interactions, binding affinities and activation/inhibition mechanisms.☆20Updated last month
- ☆10Updated 4 years ago
- Materials for KDD2023 tutorial: Knowledge-augmented Graph Machine Learning for Drug Discovery: from Precision to Interpretability☆21Updated last year
- HoTS: Sequence-based prediction of binding regions and drug-target interactions.☆26Updated 2 years ago
- a method for CPI and DTA prediction☆10Updated 2 years ago
- Source code and data files for manuscript titled "Pharmaceutical patent landscaping: A novel approach to understand patents from the drug…☆13Updated last year
- ☆17Updated last year
- ☆33Updated 4 years ago
- Method for drug repurposing from knowledge graphs and literature☆34Updated 4 years ago
- ☆31Updated 6 years ago
- ☆18Updated last year
- The official code implementation for DREAMwalk in Python.☆18Updated last year
- Comprehensive Resource of Biomedical Relations with Deep Learning Applications and Knowledge Graph Representations☆29Updated last year
- Multi-modal co-attention for drug-target interaction annotation and Its Application to SARS-CoV-2☆17Updated 2 years ago
- ☆66Updated last year