Alternatives and similar repositories for PROFILE

Users that are interested in PROFILE are comparing it to the libraries listed below

• sysbio-curie / Logical_modelling_pipeline
  Repository of the pipeline of computational methods for logical modelling of biological networks that are deregulated in diseases, develo…
  ☆9Updated 5 years ago
• PhysiBoSS / PhysiBoSS
  PhysiBoSS 2.0: a sustainable integration of stochastic Boolean and agent-based modelling frameworks
  ☆26Updated this week
• saezlab / CARNIVAL
  CAusal Reasoning for Network Identification with integer VALue programming in R
  ☆59Updated last year
• sysbio-curie / Roma
  Representation of Module Activity
  ☆10Updated 8 years ago
• saezlab / omnipath
  Python client for the OmniPath web service
  ☆45Updated last month
• cellatlas / human
  ☆43Updated 7 months ago
• hukai916 / scATACpipe
  ☆27Updated 8 months ago
• theislab / pseudodynamics
  Dynamic models for single-cell RNA-seq time series.
  ☆40Updated 6 years ago
• ISCB-Academy / Elements-of-Style-Reproducible-Workflow-Creation-Maintenance-Tutorial
  ☆19Updated 2 years ago
• Teichlab / bracer
  BraCeR - reconstruction of B cell receptor sequences from single-cell RNAseq data
  ☆42Updated 9 months ago
• rajewsky-lab / spacemake
  ☆44Updated last week
• brianhie / geosketch
  Geometry-preserving random sampling
  ☆87Updated 7 months ago
• nf-core / scflow
  Please consider using/contributing to https://github.com/nf-core/scdownstream
  ☆25Updated last year
• greenelab / ccc
  ☆23Updated 5 months ago
• jmbreda / Sanity
  Filtering of Poison noise on a single-cell RNA-seq UMI count matrix
  ☆76Updated last month
• netZoo / netbooks
  Netbooks is a JupyterHub catalog of use cases in gene regulatory network inference using netZoo methods..
  ☆42Updated 3 months ago
• genesofeve / projectR
  ☆62Updated 3 months ago
• deweylab / CellO
  CellO: Gene expression-based hierarchical cell type classification using the Cell Ontology
  ☆65Updated last year
• constantAmateur / cellSignalAnalysis
  Identify major cellular signals in bulk transcriptomes
  ☆11Updated 3 years ago
• GfellerLab / SuperCell
  Coarse-graining of large single-cell RNA-seq data into metacells
  ☆81Updated 9 months ago
• minoda-lab / universc
  UniverSC: a flexible cross-platform single-cell data processing pipeline
  ☆45Updated last year
• andygxzeng / BoneMarrowMap
  A single cell RNA-seq reference map of human hematopoietic development in the bone marrow, with balanced representation of hematopoietic …
  ☆58Updated last month
• MiraldiLab / maxATAC
  Transcription Factor Binding Prediction from ATAC-seq and scATAC-seq with Deep Neural Networks
  ☆28Updated 2 months ago
• JonathanShor / DoubletDetection
  Doublet detection in single-cell RNA-seq data.
  ☆91Updated 4 months ago
• Danko-Lab / TED
  a fully Bayesian approach to deconvolve tumor microenvironment
  ☆60Updated 3 years ago
• AllonKleinLab / PBA
  Population balance analysis
  ☆44Updated 6 years ago
• saezlab / cosmosR
  COSMOS (Causal Oriented Search of Multi-Omic Space) is a method that integrates phosphoproteomics, transcriptomics, and metabolomics data…
  ☆61Updated this week
• hbctraining / Intro-to-peak-analysis
  An introduction to various methods/approaches for the analysis of peaks generated from ChIP-seq / CUT&RUN / ATAC-seq
  ☆24Updated 2 months ago
• saezlab / OmnipathR
  R client for the OmniPath web service
  ☆137Updated last month
• dpeerlab / scKINETICS
  Code for scKINETICS (ISMB 2023)
  ☆21Updated last year