Alternatives and similar repositories for PROFILE

Users that are interested in PROFILE are comparing it to the libraries listed below

• sysbio-curie / Roma
  Representation of Module Activity
  ☆10Updated 8 years ago
• PhysiBoSS / PhysiBoSS
  PhysiBoSS 2.0: a sustainable integration of stochastic Boolean and agent-based modelling frameworks
  ☆27Updated this week
• constantAmateur / cellSignalAnalysis
  Identify major cellular signals in bulk transcriptomes
  ☆11Updated 3 years ago
• ISCB-Academy / Elements-of-Style-Reproducible-Workflow-Creation-Maintenance-Tutorial
  ☆19Updated 3 years ago
• hukai916 / scATACpipe
  ☆27Updated 11 months ago
• saezlab / CARNIVAL
  CAusal Reasoning for Network Identification with integer VALue programming in R
  ☆59Updated last year
• FertigLab / CoGAPS
  Bayesian MCMC matrix factorization algorithm
  ☆69Updated last week
• pachterlab / kallistobustools
  kallisto | bustools workflow for pre-processing single-cell RNA-seq data
  ☆118Updated 3 years ago
• timbitz / Whippet.jl
  Lightweight and Fast; RNA-seq quantification at the event-level
  ☆114Updated 4 months ago
• Huber-group-EMBL / biomaRt
  R package providing query functionality to BioMart instances like Ensembl
  ☆43Updated this week
• theislab / pseudodynamics
  Dynamic models for single-cell RNA-seq time series.
  ☆40Updated 7 years ago
• HaojiaWu / CellScopes.jl
  A Julia package for single cell and spatial data analysis
  ☆41Updated last month
• AllonKleinLab / PBA
  Population balance analysis
  ☆44Updated 6 years ago
• deweylab / CellO
  CellO: Gene expression-based hierarchical cell type classification using the Cell Ontology
  ☆67Updated 2 years ago
• YosefLab / Cassiopeia
  A Package for Cas9-Enabled Single Cell Lineage Tracing Tree Reconstruction
  ☆95Updated last week
• jianhong / ChIPpeakAnno
  ☆13Updated 2 months ago
• andygxzeng / BoneMarrowMap
  A single cell RNA-seq reference map of human hematopoietic development in the bone marrow, with balanced representation of hematopoietic …
  ☆70Updated 4 months ago
• jmbreda / Sanity
  Filtering of Poison noise on a single-cell RNA-seq UMI count matrix
  ☆78Updated 4 months ago
• C3BI-pasteur-fr / UTechSCB-SCHNAPPs
  Shiny app for the analysis of single cell data
  ☆26Updated 3 weeks ago
• saezlab / OmnipathR
  R client for the OmniPath web service
  ☆142Updated this week
• brianhie / geosketch
  Geometry-preserving random sampling
  ☆89Updated 10 months ago
• linnarsson-lab / loompy
  Python implementation of the Loom file format - http://loompy.org
  ☆147Updated 9 months ago
• churchmanlab / genewalk
  GeneWalk identifies relevant gene functions for a biological context using network representation learning
  ☆131Updated last year
• wjawaid / enrichR
  An R interface to enrichR
  ☆92Updated 7 months ago
• ulysseherbach / harissa
  Simulation and inference of gene regulatory networks based on transcriptional bursting
  ☆12Updated 3 months ago
• BorchLab / escape
  Easy single cell analysis platform for enrichment
  ☆192Updated last month
• alexyermanos / Platypus
  R package for the analysis of single-cell immune repertoires
  ☆43Updated 7 months ago
• genesofeve / projectR
  ☆62Updated 6 months ago
• moosa-r / rbioapi
  rbioapi: User-Friendly R Interface to Biologic Web Services' API
  ☆22Updated 2 months ago
• 10XGenomics / subset-bam
  ☆81Updated last year