jtextor / cpmLinks
Implementation of the cellular Potts model in pure javascript for fun an easy visualisation.
☆11Updated 6 years ago
Alternatives and similar repositories for cpm
Users that are interested in cpm are comparing it to the libraries listed below
Sorting:
- CPM implementation in pure JavaScript☆38Updated 2 weeks ago
- Modeling toolkit for biochemical simulation☆81Updated 11 months ago
- PEtab - an SBML and TSV based data format for parameter estimation problems in systems biology☆61Updated this week
- COPASI is a software application for simulation and analysis of biochemical networks and their dynamics.☆123Updated this week
- Python Environment for Modeling and Simulating Biological Systems☆130Updated last month
- PhysiCell: Scientist end users should use latest release! Developers please fork the development branch and submit PRs to the dev branch.…☆193Updated last week
- Python framework for Systems Biology modeling☆190Updated 5 months ago
- Models that demonstrate the syntax and functionality of BioNetGen language and simulation tools.☆15Updated 2 years ago
- GPU-accelerated multicellular modelling framework☆70Updated 8 months ago
- Encoding Dynamic Flux Balance Analysis in SBML☆12Updated 5 years ago
- Rule-based modeling framework☆65Updated 7 months ago
- Simulation platform of animal embryogenesis☆20Updated 3 years ago
- Python utilities for SBML☆41Updated last week
- PhysiBoSS 2.0: a sustainable integration of stochastic Boolean and agent-based modelling frameworks☆30Updated this week
- Jupyter widget for the dynamic and static visualizations of systems biology models written in PySB, BNGL, and SBML☆27Updated 2 years ago
- Online material for the Perspective: "Julia for Biologists" presented at JuliaCon 2021: https://www.youtube.com/watch?v=gRj7E5kYG1I☆101Updated 3 years ago
- Standalone Python package containing libSBML with support for SBML Level 3 Core and accepted SBML Level 3 packages.☆23Updated last week
- PyBoolNet is a Python package for the generation, modification and analysis of Boolean networks.☆52Updated last week
- Constraint-Based Reconstruction and EXascale Analysis☆45Updated last year
- CANAlization: Control & Redundancy in Boolean Networks☆26Updated last month
- MOCCASIN translates basic ODE-based MATLAB models of biological processes into SBML format.☆12Updated last year
- A collection of mathematical models with experimental data in the PEtab format as benchmark problems in order to evaluate new and existin…☆29Updated last week
- BioSCRAPE (Bio-circuit Stochastic Single-cell Reaction Analysis and Parameter Estimation)☆29Updated 9 months ago
- Release of the whole cell E. coli model.☆74Updated last year
- Netflux is a user-friendly software for developing dynamic computational models of biological networks. Models are created in Excel forma…☆30Updated last year
- A template repository for how I structure my scientific research☆108Updated last year
- Simulate microbial community batch culture experiments.☆43Updated last year
- Gillespie Stochastic Simulation Algorithm☆14Updated 12 years ago
- High-level, high-performance, constraint-based reconstruction and analysis in Julia☆63Updated 2 years ago
- A COBRApy extension for genome-scale models of metabolism and expression (ME-models)☆35Updated 7 years ago