Alternatives and similar repositories for ART

Users that are interested in ART are comparing it to the libraries listed below

• hiyama341 / teemi
  teemi: A Python package for reproducible and FAIR microbial strain construction. Simulate the entire dbtl-cycle, generate genetic parts, …
  ☆42Updated 4 months ago
• Edinburgh-Genome-Foundry / DnaCauldron
  Simple cloning simulator (Golden Gate etc.) for single and combinatorial assemblies
  ☆61Updated last month
• fhalab / evSeq
  Computational tools for extremely low-cost, massively parallel amplicon-based sequencing of every variant in protein mutant libraries.
  ☆34Updated 3 years ago
• amirpandi / METIS
  METIS: A versatile active learning workflow for optimization of genetic and metabolic networks
  ☆29Updated 2 years ago
• hsalis / SalisLabCode
  Models, design algorithms, and other software related to Salis lab publications
  ☆34Updated 7 months ago
• SBRG / ssbio
  A Python framework for structural systems biology
  ☆108Updated 4 years ago
• moshi4 / pyMSAviz
  MSA(Multiple Sequence Alignment) visualization python package for sequence analysis
  ☆133Updated 6 months ago
• klamt-lab / straindesign
  StrainDesign is a python package for the computational design of metabolic networks and based on COBRApy
  ☆42Updated 3 months ago
• greener-group / progres
  Fast protein structure searching or your money back
  ☆103Updated 2 months ago
• DennisGankin / species-aware-DNA-LM
  Species-aware DNA language modeling
  ☆18Updated 2 years ago
• brianhie / evolocity
  Evolutionary velocity with protein language models
  ☆93Updated last year
• CovertLab / WholeCellEcoliRelease
  Release of the whole cell E. coli model.
  ☆66Updated 6 months ago
• psipred / psipred
  PSIPRED Protein Secondary Structure Predictor
  ☆57Updated 7 months ago
• TurtleTools / geometricus
  A structure-based, alignment-free embedding approach for proteins. Can be used as input to machine learning algorithms.
  ☆37Updated 2 years ago
• r2dt-bio / R2DT
  Visualise RNA secondary structure in consistent, reproducible and recognisable layouts
  ☆73Updated 2 weeks ago
• soedinglab / MMseqs2-App
  MMseqs2 app to run on your workstation or servers
  ☆84Updated last week
• debbiemarkslab / plmc
  Inference of couplings in proteins and RNAs from sequence variation
  ☆109Updated 2 years ago
• manulera / OpenCloning
  An Open-Source web application to plan and document cloning and genome engineering
  ☆29Updated this week
• UCLOrengoGroup / cath-tools
  Protein structure comparison tools such as SSAP and SNAP
  ☆64Updated last year
• debbiemarkslab / EVmutation
  Mutation effects predicted from sequence co-variation
  ☆66Updated 7 years ago
• althonos / mini3di
  A NumPy port of the foldseek code for encoding protein structures to 3di.
  ☆56Updated 3 months ago
• SynBioDex / pySBOL3
  Native python implementation of SBOL 3.0 specification
  ☆39Updated 3 months ago
• SBRG / MASSpy
  ☆24Updated 2 years ago
• psipred / DMPfold2
  Fast and accurate protein structure prediction
  ☆53Updated 5 months ago
• churchlab / low-N-protein-engineering
  Code and data to reproduce analyses in Biswas et al. (2020) "Low-N protein engineering with data-efficient deep learning".
  ☆59Updated 4 years ago
• matthiaskoenig / brendapy
  BRENDA parser in python
  ☆22Updated 3 years ago
• DasLab / draw_rna
  Draw RNA secondary structures in python.
  ☆48Updated 2 weeks ago
• BuildACell / bioCRNpyler
  A modular compiler for biological chemical reaction networks
  ☆47Updated last week
• JudeWells / chainsaw
  ☆40Updated 9 months ago
• OrensteinLab / DeCoDe
  Degenerate Codon Design
  ☆13Updated 5 years ago