Create force-directed graphs of RNA secondary structures.
☆111Jun 6, 2020Updated 5 years ago
Alternatives and similar repositories for forna
Users that are interested in forna are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A container for the forna visualization software.☆22May 30, 2024Updated last year
- An RNA manipulation library.☆56Feb 16, 2024Updated 2 years ago
- Template-based RNA secondary structure visualization☆29Nov 20, 2024Updated last year
- bpRNA: Large-scale Annotation and Analysis of RNA Secondary Structure☆51Nov 23, 2023Updated 2 years ago
- 🔧rna-tools: a toolbox to analyze sequences, structures and simulations of RNA (and more) used by RNA CASP, RNA PUZZLES, and me ;-) docs …☆184Updated this week
- Wordpress hosting with auto-scaling on Cloudways • AdFully Managed hosting built for WordPress-powered businesses that need reliable, auto-scalable hosting. Cloudways SafeUpdates now available.
- A Perl extension and collection of utilities for Next-Generation Sequencing (NGS) data analysis☆23Oct 31, 2025Updated 5 months ago
- RNAlien - unsupervised RNA family model construction☆13Jun 8, 2021Updated 4 years ago
- The ViennaRNA Package☆396Feb 24, 2026Updated last month
- Integer programming based prediction of RNA secondary structures with pseudoknots☆23Nov 30, 2025Updated 4 months ago
- Centroid RNA package☆20Oct 12, 2020Updated 5 years ago
- State of the art software for RNA sequence design. The first to solve the Eterna benchmark!☆16Jul 17, 2024Updated last year
- A platform to do RNA science☆27Mar 7, 2021Updated 5 years ago
- Draft of BioJS 3: Web components☆18Mar 8, 2016Updated 10 years ago
- Visualise RNA secondary structure in consistent, reproducible and recognisable layouts☆84Apr 3, 2026Updated last week
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- awesome tools for RNA☆17Nov 15, 2022Updated 3 years ago
- RNA Secondary Structure Prediction using an Ensemble of Two-dimensional Deep Neural Networks and Transfer Learning.☆107May 23, 2025Updated 10 months ago
- The new source code of the LinearFold, linear-time prediction for RNA secondary structures☆189Apr 4, 2024Updated 2 years ago
- EXPERIMENTAL implementation of side graph☆10Apr 16, 2015Updated 10 years ago
- Improving RNA structure prediction through multitask learning on diverse crowdsourced data.☆66Jul 17, 2024Updated last year
- Finds the optimal stem configuration of an RNA sequence using the LeapHybridCQMSampler.☆17Oct 31, 2023Updated 2 years ago
- Draw RNA secondary structures in python.☆52Jun 24, 2025Updated 9 months ago
- Very flexible tools for plotting and analyzing all kinds of RNA structure data☆16Feb 6, 2026Updated 2 months ago
- Parallel solution for local RNA secondary structure analysis☆12Feb 14, 2023Updated 3 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting with the flexibility to host WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Cloudways by DigitalOcean.
- Parallel Recipes : parallel workflow execution made easy☆13Sep 1, 2015Updated 10 years ago
- Single-sequence and Profile-based Prediction of RNA Solvent Accessibility Using Dilated Convolution Neural Network☆13Jun 22, 2022Updated 3 years ago
- Python implementation of the FR3D software for searching and annotating RNA 3D structures☆22Mar 26, 2026Updated 2 weeks ago
- Linear-Time Approximation of RNA Folding Partition Function and Base Pairing Probabilities☆35May 24, 2024Updated last year
- Draw RNA secondary structures☆10Aug 20, 2021Updated 4 years ago
- Basic RNA 3D structure comparison metrics in RNA-Puzzles, including INF, DI and RMSD. It also includes `RNA_normalizer` tool in pdb_utils…☆25Dec 3, 2024Updated last year
- MXfold2: RNA secondary structure prediction using deep learning with thermodynamic integration☆163Mar 22, 2026Updated 2 weeks ago
- Analyse Nucleic Acids Structure and Simulations with baRNAba☆50Mar 20, 2024Updated 2 years ago
- RIblast is ultrafast RNA-RNA interaction prediction software based on seed-and-extension algorithm for comprehensive lncRNA interactome a…☆18May 9, 2023Updated 2 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click and start building anything your business needs.
- Analysis pipeline for RNA structural probing mutational profiling data sequenced on Nanopore devices☆11Feb 10, 2024Updated 2 years ago
- Robust RNA structure refinement by a nucleobase-centric sampling algorithm coupled with a backbone rotameric and quantum-mechanical-energ…☆20Apr 3, 2021Updated 5 years ago
- With RNArtist, you construct a collection of RNA structures that can be gathered into RNA families, projects,...☆178Nov 24, 2023Updated 2 years ago
- A fast tool to convert BioJS components into Galaxy visualization plugins.☆14Jul 15, 2020Updated 5 years ago
- pytorch implementation for "RNA Secondary Structure Prediction By Learning Unrolled Algorithms"☆122Apr 7, 2024Updated 2 years ago
- ☆23Jul 14, 2024Updated last year
- Simulation code for the prediction of RNA structures.☆13Jan 21, 2025Updated last year