GeomScale / dingo
A python library for metabolic networks sampling and analysis
☆58Updated 2 months ago
Alternatives and similar repositories for dingo
Users that are interested in dingo are comparing it to the libraries listed below
Sorting:
- Practical volume computation and sampling in high dimensions☆165Updated 2 weeks ago
- Python package for building and analyzing models using ModelSEED☆23Updated 3 weeks ago
- Enzyme-constrained genome-scale models in python☆28Updated last year
- Mackinac: A bridge between ModelSEED and COBRApy☆19Updated 6 years ago
- Documentation repository of Google Summer of Code (GSoC) project ideas for cBioPortal and related projects☆135Updated 2 months ago
- Enumerating biosynthetic pathways in metabolic networks☆12Updated 3 months ago
- Data-Driven Constraint-based analysis☆12Updated 2 years ago
- Pathway-Guided Pruning Reconstruction of Genome-Scale Metabolic Models☆12Updated last year
- framed: a metabolic modeling package for python☆26Updated 5 years ago
- Enzyme models that take into account kinetics, allostery and thermodynamics☆27Updated 8 months ago
- Python interface for running COMETS simulations and analyzing the results☆12Updated 3 months ago
- Dynamic FBA for use with COBRApy metabolic models☆10Updated last year
- Uncover organisms' metabolic blueprints☆13Updated 11 months ago
- Python package to study microbial communities using metabolic modeling.☆100Updated 2 weeks ago
- ☆9Updated last year
- CarveMe: genome-scale metabolic model reconstruction☆169Updated last month
- Computation of Microbial Ecosystems in Time and Space☆24Updated 2 weeks ago
- memote – the genome-scale metabolic model test suite☆131Updated last year
- GPRuler, an open-source computational framework to automate the reconstruction process of Gene-Protein-Reaction (GPR) rules within metabo…☆11Updated 2 years ago
- ModelPolisher accesses the BiGG Models knowledgebase to annotate SBML models.☆23Updated 3 months ago
- Apothesis: A kinetic Monte Carlo software for deposition processes☆22Updated last month
- Retrieves kcat data and adds protein allocation constraints to stoichiometric metabolic models according to the sMOMENT method☆14Updated 2 months ago
- D3.js based visualizations of cobrapy metabolic models☆45Updated 5 years ago
- From annotated genomes to metabolic screening in large scale microbiotas☆57Updated this week
- ReFramed: metabolic modeling package☆59Updated 2 weeks ago
- A COBRApy extension for genome-scale models of metabolism and expression (ME-models)☆36Updated 6 years ago
- SMETANA: a tool to analyse interactions in microbial communities☆58Updated last week
- Python package for creating, calibrating and simulating RBA models☆12Updated last year
- Main documentation site for NRNB GSoC project ideas and resources☆142Updated 4 months ago
- CBMPy is a Python based platform for constraint based modelling and analysis.☆19Updated last year