A python library for metabolic networks sampling and analysis
☆67Apr 26, 2026Updated this week
Alternatives and similar repositories for dingo
Users that are interested in dingo are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Practical volume computation and sampling in high dimensions☆182Apr 4, 2026Updated 3 weeks ago
- EnDED is a program that aims to detect environmentally-driven ("indirect") edges in an association network.☆10Dec 1, 2023Updated 2 years ago
- GPRuler, an open-source computational framework to automate the reconstruction process of Gene-Protein-Reaction (GPR) rules within metabo…☆11Oct 11, 2022Updated 3 years ago
- Mackinac: A bridge between ModelSEED and COBRApy☆19Aug 20, 2018Updated 7 years ago
- Python package for building and analyzing models using ModelSEED☆27Feb 11, 2026Updated 2 months ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Highly Optimized Polytope Sampling☆13Mar 10, 2026Updated last month
- GeomScale in Google Summer of Code 2024☆12Feb 1, 2024Updated 2 years ago
- COnstraint Based Reconstruction and EXascale Analysis (in Julia)☆18Sep 26, 2025Updated 7 months ago
- StrainDesign is a python package for the computational design of metabolic networks and based on COBRApy☆50Mar 23, 2026Updated last month
- Minimal Microbial Consortia creation tools☆13Jan 28, 2022Updated 4 years ago
- annotating microbial co-occurrence networks☆12Oct 7, 2025Updated 6 months ago
- t-distributed stochastic neighbor embedding for microbiota data☆12May 12, 2019Updated 6 years ago
- Software tool for metabolic modelling in Systems Biology☆10Dec 30, 2020Updated 5 years ago
- Kyoto Encylopedia of Genes and Genomes (KEGG) NetworkX Topological parser automates downloading, parsing, and converting from a KEGG Mark…☆12May 8, 2024Updated last year
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Python package to study microbial communities using metabolic modeling.☆127Mar 31, 2026Updated 3 weeks ago
- Data-Driven Constraint-based analysis☆12Nov 4, 2022Updated 3 years ago
- Metabolic modeling tutorial for EMBO practical course: Metabolite and species dynamics in microbial communities 2022☆13Jan 8, 2024Updated 2 years ago
- microbial association network clustering algorithm☆14Dec 14, 2023Updated 2 years ago
- The aim of this repository is to maintain, refine, and expand the AGORA collection of genome-scale metabolic reconstructions for human gu…☆25Dec 10, 2020Updated 5 years ago
- SMETANA: a tool to analyse interactions in microbial communities☆70May 6, 2025Updated 11 months ago
- Solving sudoku puzzles with convolutional neural networks and image processing techniques.☆15Dec 8, 2022Updated 3 years ago
- optlang - sympy based mathematical programming language☆268Mar 23, 2026Updated last month
- ☆15May 8, 2024Updated last year
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Enzyme-constrained genome-scale models in python☆37Oct 25, 2023Updated 2 years ago
- An integrated visual environment for metabolic modeling methods such as FBA, FVA and Elementary Flux Modes, and advanced features such as…☆65Apr 2, 2026Updated 3 weeks ago
- The BiGG Models website server☆89Nov 7, 2019Updated 6 years ago
- ☆11Aug 26, 2022Updated 3 years ago
- memote – the genome-scale metabolic model test suite☆146Aug 14, 2025Updated 8 months ago
- A matlab implementation for sampling log-concave distributions with polytope constraints☆17Oct 5, 2024Updated last year
- Uncover organisms' metabolic blueprints☆16Jun 18, 2024Updated last year
- GeomScale in Google Summer of Code 2021☆10Feb 10, 2021Updated 5 years ago
- GeomScale in Google Summer of Code 2020☆13Jan 14, 2020Updated 6 years ago
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- Detect complete horizontal gene transfer (HGT) event rapidly and accurately from complex metagenomics data.☆19Feb 2, 2026Updated 2 months ago
- Enumerating biosynthetic pathways in metabolic networks☆13Feb 5, 2025Updated last year
- PaperBLAST: find papers about a protein or its homologs☆52Apr 10, 2026Updated 2 weeks ago
- Efficient random sampling for COBRA models☆14Oct 14, 2021Updated 4 years ago
- A container for all enzyme constrained models created by GECKO.☆16Jul 4, 2022Updated 3 years ago
- ☆18Dec 2, 2022Updated 3 years ago
- Pipelines used in the lab.☆15Mar 26, 2025Updated last year