GeomScale / dingoLinks
A python library for metabolic networks sampling and analysis
☆62Updated 2 months ago
Alternatives and similar repositories for dingo
Users that are interested in dingo are comparing it to the libraries listed below
Sorting:
- Enzyme-constrained genome-scale models in python☆29Updated 2 years ago
- memote – the genome-scale metabolic model test suite☆143Updated 3 months ago
- CBMPy is a Python based platform for constraint based modelling and analysis.☆19Updated last year
- Simulate microbial community batch culture experiments.☆42Updated last year
- ReFramed: metabolic modeling package☆62Updated 2 months ago
- ModelPolisher accesses the BiGG Models knowledgebase to annotate SBML models.☆23Updated 9 months ago
- Python package to study microbial communities using metabolic modeling.☆111Updated this week
- Dynamic FBA for use with COBRApy metabolic models☆10Updated 2 years ago
- Python interface for running COMETS simulations and analyzing the results☆14Updated last month
- This repository contains the definitive copy of the biochemistry and metadata used to construct models using the ModelSEED/ProbAnno appro…☆64Updated last week
- Enumerating biosynthetic pathways in metabolic networks☆12Updated 9 months ago
- Python package for building and analyzing models using ModelSEED☆24Updated 7 months ago
- CarveMe: genome-scale metabolic model reconstruction☆187Updated 2 months ago
- A collection of M models downloaded from published studies☆17Updated 9 years ago
- Pathway-Guided Pruning Reconstruction of Genome-Scale Metabolic Models☆12Updated last year
- Enzyme models that take into account kinetics, allostery and thermodynamics☆27Updated last year
- Uncover organisms' metabolic blueprints☆13Updated last year
- SMETANA: a tool to analyse interactions in microbial communities☆65Updated 6 months ago
- framed: a metabolic modeling package for python☆26Updated 6 years ago
- Python package for creating, calibrating and simulating RBA models☆13Updated 2 years ago
- Computation of Microbial Ecosystems in Time and Space☆26Updated 3 weeks ago
- The BiGG Models website server☆85Updated 6 years ago
- From annotated genomes to metabolic screening in large scale microbiotas☆66Updated 6 months ago
- StrainDesign is a python package for the computational design of metabolic networks and based on COBRApy☆46Updated 2 weeks ago
- GPRuler, an open-source computational framework to automate the reconstruction process of Gene-Protein-Reaction (GPR) rules within metabo…☆11Updated 3 years ago
- Repository of tutorials for The COBRA Toolbox☆23Updated last week
- An integrated visual environment for metabolic modeling with common methods such as FBA, FVA and Elementary Flux Modes, and advanced feat…☆58Updated 2 weeks ago
- Metabolic modeling tutorial for EMBO practical course: Metabolite and species dynamics in microbial communities 2022☆13Updated last year
- mergem is a python package and command-line tool for merging, comparing, and translating genome-scale metabolic models☆13Updated 3 months ago
- This repository contains all source code in the reconstructor python package, installation instructions, important file dependencies, and…☆23Updated this week