GeomScale / dingoLinks
A python library for metabolic networks sampling and analysis
☆61Updated last month
Alternatives and similar repositories for dingo
Users that are interested in dingo are comparing it to the libraries listed below
Sorting:
- Enzyme-constrained genome-scale models in python☆28Updated last year
- Dynamic FBA for use with COBRApy metabolic models☆10Updated 2 years ago
- Python package to study microbial communities using metabolic modeling.☆110Updated last month
- ReFramed: metabolic modeling package☆61Updated 3 weeks ago
- Python package for building and analyzing models using ModelSEED☆23Updated 5 months ago
- Pathway-Guided Pruning Reconstruction of Genome-Scale Metabolic Models☆12Updated last year
- Enumerating biosynthetic pathways in metabolic networks☆12Updated 8 months ago
- This repository contains all source code in the reconstructor python package, installation instructions, important file dependencies, and…☆23Updated 3 months ago
- The RAVEN Toolbox for genome scale model reconstruction, curation and analysis.☆113Updated 2 weeks ago
- memote – the genome-scale metabolic model test suite☆140Updated last month
- Metabolic modeling tutorial for EMBO practical course: Metabolite and species dynamics in microbial communities 2022☆13Updated last year
- BiGMeC - Biosynthetic Gene cluster Metabolic pathway Constructor☆15Updated 2 years ago
- GPRuler, an open-source computational framework to automate the reconstruction process of Gene-Protein-Reaction (GPR) rules within metabo…☆11Updated 2 years ago
- Simulate microbial community batch culture experiments.☆42Updated 11 months ago
- CarveMe: genome-scale metabolic model reconstruction☆184Updated 3 weeks ago
- SMETANA: a tool to analyse interactions in microbial communities☆64Updated 5 months ago
- An integrated visual environment for metabolic modeling with common methods such as FBA, FVA and Elementary Flux Modes, and advanced feat…☆58Updated this week
- EMBL GEMs: A collection of GEnome-scale Models for bacterial species☆29Updated 6 years ago
- From annotated genomes to metabolic screening in large scale microbiotas☆64Updated 4 months ago
- Python package for creating, calibrating and simulating RBA models☆12Updated 2 years ago
- ☆24Updated 11 months ago
- mergem is a python package and command-line tool for merging, comparing, and translating genome-scale metabolic models☆13Updated last month
- This repository contains the definitive copy of the biochemistry and metadata used to construct models using the ModelSEED/ProbAnno appro…☆63Updated 8 months ago
- The aim of this repository is to maintain, refine, and expand the AGORA collection of genome-scale metabolic reconstructions for human gu…☆23Updated 4 years ago
- ModelPolisher accesses the BiGG Models knowledgebase to annotate SBML models.☆23Updated 8 months ago
- framed: a metabolic modeling package for python☆26Updated 5 years ago
- refineGEMs is a python package inteded to help with the curation of genome-scale metabolic models (GEMS).☆16Updated last week
- Cython bindings and Python interface to Prodigal, an ORF finder for genomes and metagenomes. Now with SIMD!☆170Updated last month
- A highly scalable, user-interactive tool for the large scale analysis of Biosynthetic Gene Clusters data☆85Updated last month
- Mackinac: A bridge between ModelSEED and COBRApy☆19Updated 7 years ago