Danko-Lab / clipnet
A deep learning approach to predicting transcription initiation from sequence at single nucleotide resolution
☆9Updated 3 weeks ago
Related projects ⓘ
Alternatives and complementary repositories for clipnet
- Repository for modeling PRO-cap data with the BPNet-like model, ProCapNet.☆12Updated last month
- ☆27Updated this week
- ☆16Updated last month
- Preprocesses and Aligns Run-On Sequencing (PRO/GRO/ChRO-seq) data from Single-Read or Paired-End Illumina Sequencing☆24Updated this week
- Epimap processing and analysis code repository☆33Updated 2 years ago
- ☆46Updated 2 years ago
- Deep learning model built to quantitatively predict the activities of developmental and housekeeping enhancers from DNA sequence in Droso…☆54Updated last year
- Pipeline for Universal Mapping of ATAC-seq☆24Updated 6 months ago
- This repository hosts a minimal version of a Python API for BPNet.☆32Updated 3 months ago
- Benchmarking computational methods for single-cell ATAC-seq and CUT&Tag☆14Updated 3 months ago
- ☆34Updated 6 months ago
- A method for analyzing scATAC-seq experiments.☆23Updated last month
- tools and notes for long reads analysis☆19Updated 8 months ago
- Processing workflow for COVID-19 single cell data☆17Updated 2 years ago
- code to run EPInformer for gene expression prediction and gene-enhancer links prioritization☆31Updated this week
- Evaluating genomic sequence models for explaining personalized expression variation☆16Updated 11 months ago
- Clustering motif models to remove redundancy☆37Updated last year
- DeepLoop robustly identifies enhancer-promoter interactions from low-depth and single-cell Hi-C data☆29Updated last year
- Notes on ChIP-seq and other-seq-related tools☆22Updated 4 months ago
- Estimation of Promoter Activity from RNA-Seq data☆49Updated 2 years ago
- A rapid and robust plate-based single cell ATAC-seq (scATAC-seq) method☆43Updated 3 years ago
- Single-cell Hi-C data analysis toolbox☆24Updated 3 years ago
- OCR-Phenotype Association from Tissue-Aware Conservation Inference Toolkit☆16Updated 2 months ago
- ☆16Updated 4 months ago
- ☆22Updated 7 months ago
- C.Origami, a prediction and screening framework for cell type-specific 3D chromatin structure.☆66Updated 4 months ago
- Transcription Factor Binding Prediction from ATAC-seq and scATAC-seq with Deep Neural Networks☆26Updated last month
- Pipeline for efficient genomic data processing.☆20Updated 2 months ago
- Single Cell Analysis of Five'Ends☆45Updated 8 months ago
- Geometry-preserving random sampling☆75Updated 3 weeks ago