ome / docker-example-omeroLinks
OMERO Docker compose example
☆26Updated last year
Alternatives and similar repositories for docker-example-omero
Users that are interested in docker-example-omero are comparing it to the libraries listed below
Sorting:
- A module with convenience functions for writing Python code that interacts with OMERO.☆45Updated last week
- EASI-FISH analysis pipeline for spatial transcriptomics☆35Updated 6 months ago
- Jupyter Notebooks for the Image Data Resource☆18Updated 2 years ago
- An OMERO.web app for creating Figures from images in OMERO☆17Updated 3 weeks ago
- OMERO.server production docker image☆15Updated 2 months ago
- AICS Segmentation (One-Way) Mirror☆45Updated 4 years ago
- MethodsJ2☆14Updated 3 years ago
- Django-based OMERO.web client☆19Updated 3 weeks ago
- Multiple file format reading directly into napari using pure Python☆36Updated 10 months ago
- Curated metadata for all studies published in the Image Data Resource☆16Updated 2 weeks ago
- StarDist plugin for napari☆38Updated 9 months ago
- Python module utilizing libCZI for reading Zeiss CZI files.☆38Updated last month
- Image registration (alignment) software for large microscopy images☆25Updated last year
- Easily read and write ome-tiff images in python☆27Updated last year
- NEUBIAS Academy @Home: Interactive Bioimage Analysis with Python and Jupyter☆62Updated last year
- Tools and scripts for EASI-FISH image data analysis☆17Updated 2 years ago
- ☆36Updated this week
- QuPath extension to interactively align images☆23Updated last week
- An OMERO CLI plugin for creating transfer packets between OMERO servers.☆17Updated this week
- SIMPLI is a highly configurable pipeline for the analysis of multiplexed imaging data.☆37Updated last year
- Track and lineage visualization with btrack and Napari☆45Updated 7 months ago
- An automatic deep learning algorithm for spot detection in fluorescence microscopy images.☆21Updated last week
- ☆19Updated 4 years ago
- An introduction to bioimage analysis - http://bioimagebook.github.io☆68Updated 10 months ago
- Visualizing feature measurements on label images in napari☆10Updated 10 months ago
- Whole slide image registration through wsireg in napari.☆13Updated 2 years ago
- Raw format to OME-TIFF converter☆53Updated last week
- Detect morphological motifs, such as blebs, filopodia, and lamellipodia, from 3D images of surfaces, particularly images of cell surfaces…☆29Updated last month
- Toolbox for the analysis of smFISH images.☆62Updated last year
- ImageJ macros to run Cellpose from Fiji (using the plugin from BIOP-EPFL) and to match nuclei and cell body label maps.☆14Updated 2 months ago