Identification of NBS-LRR genes in genomic sequence
☆11Mar 30, 2022Updated 4 years ago
Alternatives and similar repositories for NLGenomeSweeper
Users that are interested in NLGenomeSweeper are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- NLR annotation tool☆39Mar 6, 2024Updated 2 years ago
- NLR-Annotator upload☆78Jul 19, 2023Updated 3 years ago
- We report a section-wide NLRome for the tuber-bearing section Petota, including the most important non-cereal food crop potato. Evolution…☆23Oct 31, 2025Updated 11 months ago
- Annotation Pipeline for NLR genes☆17Dec 6, 2018Updated 7 years ago
- PAF (pairwise alignment format) validator based on extended CIGAR strings☆15Aug 10, 2025Updated last year
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Diploid genome assembly analysis tools☆14Sep 19, 2024Updated 2 years ago
- the pangenome graph evaluator☆29Apr 12, 2021Updated 5 years ago
- Perl scripts for working with the GFF format☆16Aug 24, 2011Updated 15 years ago
- Library and tools to deal with polyploid genomics☆11May 10, 2021Updated 5 years ago
- Gene prediction software☆72Oct 22, 2022Updated 4 years ago
- Resistify is a program which rapidly identifies and classifies plant NLR and PRR genes from protein sequences. It is designed to be light…☆52Jul 22, 2026Updated 3 months ago
- STAG: Species Tree from All Genes☆37Dec 10, 2018Updated 7 years ago
- geoRge: a computational tool for stable isotope labelling detection in LC/MS-based untargeted metabolomics☆11Sep 17, 2021Updated 5 years ago
- A mosaic genome painting tool for plant genomes☆19May 6, 2026Updated 5 months ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Extracts subgraphs or components from a graph in GFA format☆24Nov 18, 2024Updated last year
- Package to Draw NLR Domain Architecture using NLRtracker Output☆17Jul 30, 2021Updated 5 years ago
- The full-length Homology-based R-gene Prediction (HRP) pipeline to comprehensively identify full-length NB-LRR gene models within genome …☆11Jul 27, 2023Updated 3 years ago
- A organelle de novo genome assembly toolkit☆88Feb 22, 2025Updated last year
- We developed GenomeSyn as a new tool for constructing and visualizing genome synteny, its novel design and implementation can serve as a …☆36Jan 3, 2022Updated 4 years ago
- a tool to identify species and inter-species hybrids and chromosome copy number variants from short-read data☆19Sep 13, 2019Updated 7 years ago
- AUGUSTUS v3.2.1 for installation on Mac OS X☆12May 21, 2018Updated 8 years ago
- A web-based, interactive pangenome visualization tool☆21Apr 10, 2023Updated 3 years ago
- Code for paper titled, "Beyond Homology Transfer: Deep Learning for Automated Annotation of Proteins". Preprint available at: http://www.…☆18Jul 26, 2017Updated 9 years ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- Visualing species tree from ASTRAL with gene tree discordance☆35Aug 21, 2026Updated 2 months ago
- Open, MIT-licensed food, nutrition & agricultural science research skills for Claude Code, Codex, MiniMax Agent, OpenClaw & Grok Build — …☆37Aug 31, 2026Updated last month
- Converting and demultiplexing of PacBio BAM files into gzipped fasta and fastq files.☆40Mar 14, 2023Updated 3 years ago
- GRAph-based Finding of Individual Motif Occurrences☆33Aug 29, 2024Updated 2 years ago
- De novo chromosome-level scaffolding and phasing tool using Hi-C☆30Updated this week
- EasyHap is a cross-platform toolkit for regional haplotype analysis and visualization using phased VCF data from fungal, plant, and anima…☆21Oct 10, 2026Updated last week
- Prediction of apoplastic and cytoplasmic effectors in fungi and oomycetes☆27Mar 31, 2026Updated 6 months ago
- Program for finding horizontal gene transfer using BLAST result☆11May 26, 2023Updated 3 years ago
- re-assembly and analysis of the Marine Microbial Eukaryotic Transcriptome Sequencing Project☆14Sep 18, 2018Updated 8 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- ☆50Jul 23, 2025Updated last year
- A whole-genome and alignment-free prokaryotic phylogeny tool☆23May 26, 2026Updated 4 months ago
- trackc aims to produce beautiful genome tracks that are highly customizable☆19Jun 6, 2026Updated 4 months ago
- Topology weighting from unphased genotypes of any ploidy☆30Aug 13, 2026Updated 2 months ago
- Get the consensus sequences from SAM (and BAM) files, ignoring the reference☆14Oct 27, 2019Updated 6 years ago
- Neural network classification of TE☆104Apr 3, 2026Updated 6 months ago
- phylogenetic networks using ggplot2 and ggtree☆13Dec 24, 2024Updated last year