☆27Jun 5, 2025Updated last year
Alternatives and similar repositories for GenBench
Users that are interested in GenBench are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Code repository for study ''Evaluating the representational power of pre-trained DNA language models for regulatory genomics"☆27Jun 26, 2024Updated 2 years ago
- [ICML 2024] VQDNA: Unleashing the Power of Vector Quantization for Multi-Species Genomic Sequence Modeling☆10Sep 22, 2024Updated 2 years ago
- ☆25Apr 22, 2026Updated 5 months ago
- Polygraph evaluates and compares groups of nucleic acid sequences based on their sequence and functional content for effective design of …☆40Mar 27, 2025Updated last year
- A Large-Scale Dataset and Framework for Genomic Foundation Model Benchmarking☆32Sep 1, 2026Updated 3 weeks ago
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- ☆20Dec 20, 2025Updated 9 months ago
- Size-Wise Analysis of Transfer Learning of pLM Embeddings☆13Jun 10, 2025Updated last year
- JanusDNA☆33Mar 19, 2026Updated 6 months ago
- KGANCDA is effective to predict associations between circRNA and cancer, which is based on knowledge graph attention network. The detail …☆13Dec 12, 2022Updated 3 years ago
- LLM for genomic☆14Feb 23, 2024Updated 2 years ago
- Toolkit for training hyenaDNA-based autoregressive language models on DNA sequences.☆52Oct 4, 2024Updated last year
- A framework for discovering, compiling, and validating reusable skills for scientific agents.☆39Sep 14, 2026Updated last week
- Library to extract embeddings for DNA sequences using BioFM genomics foundation model☆21Aug 13, 2025Updated last year
- Exploring how tokenization shapes the performance and generalization of single-cell foundation models.☆20Apr 16, 2026Updated 5 months ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- ☆48Sep 13, 2023Updated 3 years ago
- PrePATH: A parallel toolkit for Preprocessing WSI☆56Mar 27, 2026Updated 5 months ago
- Controllable Protein Sequence Generation with LLM Preference Optimization, AAAI 2025☆18Mar 10, 2025Updated last year
- This repo focuses on supervised and self-supervised bio-sequence representation learning☆22Oct 11, 2023Updated 2 years ago
- ☆24Jul 27, 2026Updated last month
- A collection of awesome bio-foundation models, including protein, RNA, DNA, gene, single-cell, and so on.☆320May 28, 2025Updated last year
- [NeurIPS 2024] Image Understanding Makes for A Good Tokenizer for Image Generation☆21Dec 17, 2024Updated last year
- Explore a comprehensive collection of basic theories, applications, papers, and best practices about Large Language Models (LLMs) in geno…☆156Aug 26, 2026Updated 3 weeks ago
- Generating Protein Variants with Different Generative Models (HMM, VAE, ESM-2, ProtGPT2)☆11Mar 14, 2024Updated 2 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- ☆18May 15, 2023Updated 3 years ago
- Ctrl-DNA: Controllable Cell-Type-Specific Regulatory DNA Design via Constrained RL☆20May 28, 2025Updated last year
- [ICLR 2024] DNABERT-2: Efficient Foundation Model and Benchmark for Multi-Species Genome☆516Jan 1, 2026Updated 8 months ago
- ☆12Nov 9, 2020Updated 5 years ago
- Deep Learning tool trained on protein sequence embeddings from protein language models to accurately detect remote homologues for CATH su…☆14Jun 22, 2022Updated 4 years ago
- Benchmarks for classification of genomic sequences☆183Aug 14, 2025Updated last year
- A framework to score and analyze variant effects genome-wide using ChromBPNet models☆21Mar 2, 2026Updated 6 months ago
- RNA-seq prediction with deep convolutional neural networks.☆264Updated this week
- ☆18May 20, 2026Updated 4 months ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- GENA-LM is a transformer masked language model trained on human DNA sequence.☆231Updated this week
- Provide RNA and DNA Foundation Model Benchmarks and Applications☆29Nov 26, 2025Updated 9 months ago
- Foundation Models for Genomics & Transcriptomics☆920Feb 24, 2026Updated 6 months ago
- [NPJ AI] A foundation model for individual genome modelling☆29May 9, 2026Updated 4 months ago
- ☆12Mar 17, 2023Updated 3 years ago
- ☆19Jul 10, 2025Updated last year
- ☆90Sep 20, 2023Updated 3 years ago