Alternatives and similar repositories for GenBench

Users that are interested in GenBench are comparing it to the libraries listed below

• TencentAILabHealthcare / DNAGPT
  ☆41Updated last year
• OmicsML / CellPLM
  Official repo for CellPLM: Pre-training of Cell Language Model Beyond Single Cells.
  ☆88Updated last year
• PharMolix / LangCell
  Code for "LangCell: Language-Cell Pre-training for Cell Identity Understanding".
  ☆60Updated 6 months ago
• jkobject / geneformer
  ☆70Updated last month
• terry-r123 / RNABenchmark
  [NeurIPS 2024] BEACON: Benchmark for Comprehensive RNA Tasks and Language Models
  ☆45Updated 11 months ago
• mims-harvard / PINNACLE
  Contextual AI models for single-cell protein biology
  ☆86Updated 5 months ago
• microsoft / zero-shot-scfoundation
  ☆72Updated 10 months ago
• snap-stanford / GEARS
  GEARS is a geometric deep learning model that predicts outcomes of novel multi-gene perturbations
  ☆272Updated 5 months ago
• theislab / chemCPA
  Code for "Predicting Cellular Responses to Novel Drug Perturbations at a Single-Cell Resolution", NeurIPS 2022.
  ☆118Updated 5 months ago
• Boom5426 / Awesome-Virtual-Cell
  Awesome-AI-Virtual-Cell
  ☆31Updated 2 weeks ago
• TencentAILabHealthcare / scBERT
  ☆320Updated last year
• genbio-ai / ModelGenerator
  AIDO.ModelGenerator is a software stack powering the development of an AI-driven Digital Organism (AIDO) by enabling researchers to adapt…
  ☆76Updated last month
• EperLuo / scDiffusion
  A model developed for the generation of scRNA-seq data
  ☆67Updated 4 months ago
• OmicsML / awesome-foundation-model-single-cell-papers
  ☆303Updated last week
• ml4bio / RNA-FM
  Nature Methods: RNA foundation model (together with RhoFold)
  ☆286Updated last month
• theislab / nicheformer
  Repository for Nicheformer: a foundation model for single-cell and spatial omics
  ☆94Updated 3 months ago
• ML-Bioinfo-CEITEC / genomic_benchmarks
  Benchmarks for classification of genomic sequences
  ☆149Updated 3 months ago
• genbio-ai / AIDO
  AI-Driven Digital Organism (AIDO) is a system of multiscale foundation models for predicting, simulating and programming biology at all l…
  ☆99Updated 2 months ago
• yhr91 / GEARS_misc
  ☆19Updated 9 months ago
• HelloWorldLTY / scEval
  Codes for paper: Evaluating the Utilities of Large Language Models in Single-cell Data Analysis.
  ☆71Updated last month
• chenkenbio / SpliceBERT
  Primary RNA sequence model
  ☆38Updated last year
• lbcb-sci / RiNALMo
  RiboNucleic Acid (RNA) Language Model
  ☆112Updated last month
• Perturbation-Response-Prediction / PRnet
  PRnet is a flexible and scalable perturbation-conditioned generative model predicting transcriptional responses to unseen complex perturb…
  ☆54Updated 7 months ago
• ArcInstitute / state
  State is a machine learning model that predicts cellular perturbation response across diverse contexts
  ☆241Updated this week
• bowang-lab / genomic-FM
  ☆27Updated last month
• apeterswu / Awesome-Bio-Foundation-Models
  A collection of awesome bio-foundation models, including protein, RNA, DNA, gene, single-cell, and so on.
  ☆234Updated last month
• dohlee / chromoformer
  The official code implementation for Chromoformer in PyTorch. (Lee et al., Nature Communications. 2022)
  ☆36Updated last year
• snap-stanford / UCE
  UCE is a zero-shot foundation model for single-cell gene expression data
  ☆207Updated 4 months ago
• xianglin226 / Benchmarking-Single-Cell-Perturbation
  Single-Cell (Perturbation) Model Library
  ☆63Updated 2 weeks ago
• frederikkemarin / BEND
  Benchmarking DNA Language Models on Biologically Meaningful Tasks
  ☆120Updated 8 months ago