Alternatives and similar repositories for scDiffusion-X

Users that are interested in scDiffusion-X are comparing it to the libraries listed below

• EperLuo / scDiffusion
  A model developed for the generation of scRNA-seq data
  ☆66Updated 4 months ago
• aaronwtr / PertEval
  Evaluation suite for transcriptomic perturbation effect prediction models. Includes support for single-cell foundation models.
  ☆26Updated this week
• theislab / CellFlow
  Modeling complex perturbations with CellFlow
  ☆57Updated this week
• SuperBianC / scMulan
  Repository for paper scMulan: a multitask generative pre-trained language model for single-cell analysis.
  ☆58Updated last year
• Genentech / PerturbQA
  ☆13Updated 3 months ago
• microsoft / zero-shot-scfoundation
  ☆66Updated 10 months ago
• HelloWorldLTY / UKBioLM
  ☆18Updated 2 months ago
• OmicsML / scDiff
  scDiff: A General Single-Cell Analysis Framework via Conditional Diffusion Generative Models
  ☆28Updated 10 months ago
• bm2-lab / STAMP
  ☆10Updated last month
• OmicsML / CellPLM
  Official repo for CellPLM: Pre-training of Cell Language Model Beyond Single Cells.
  ☆86Updated last year
• jsxlei / scCLIP
  ☆29Updated last year
• TencentAILabHealthcare / scPROTEIN
  ☆51Updated 6 months ago
• GET-Foundation / get_model
  A modular framework for multimodal cross-cell-type transcriptional regulation models
  ☆79Updated 2 months ago
• yhr91 / GEARS_misc
  ☆20Updated 8 months ago
• jkobject / geneformer
  ☆69Updated last month
• biomed-AI / CellFM
  ☆55Updated last month
• theislab / nicheformer
  Repository for Nicheformer: a foundation model for single-cell and spatial omics
  ☆94Updated 3 months ago
• welch-lab / PerturbNet
  PerturbNet is a deep generative model that can predict the distribution of cell states induced by chemical or genetic perturbation
  ☆34Updated last month
• theislab / CFGen
  ☆17Updated this week
• poseidonchan / TAPE
  Deep learning-based tissue compositions and cell-type-specific gene expression analysis with tissue-adaptive autoencoder (TAPE)
  ☆57Updated last year
• JinmiaoChenLab / SpatialGlue
  SpatialGlue is a novel deep learning methods for spatial multi-omics data integration.
  ☆62Updated last year
• suinleelab / contrastiveVI
  ☆55Updated last year
• HelloWorldLTY / scEval
  Codes for paper: Evaluating the Utilities of Large Language Models in Single-cell Data Analysis.
  ☆70Updated last week
• Perturbation-Response-Prediction / PRnet
  PRnet is a flexible and scalable perturbation-conditioned generative model predicting transcriptional responses to unseen complex perturb…
  ☆52Updated 6 months ago
• hui2000ji / scETM
  A generative topic model that facilitates integrative analysis of large-scale single-cell RNA sequencing data.
  ☆50Updated 3 years ago
• mcgilldinglab / CellAgentChat
  Python agent-based model tool for inference, visualization and analysis of cell-cell communication from single-cell data
  ☆31Updated 3 months ago
• xianglin226 / Benchmarking-Single-Cell-Perturbation
  Single-Cell (Perturbation) Model Library
  ☆64Updated this week
• jiang-q19 / scPRAM
  scPRAM accurately predicts single-cell gene expression perturbation response based on attention mechanism
  ☆14Updated 8 months ago
• theislab / scTab
  ☆59Updated 9 months ago
• yulun-rayn / graphVCI
  Predicting Cellular Responses with Variational Causal Inference and Refined Relational Information (ICLR 2023)
  ☆19Updated last week