Evaluating genomic sequence models for explaining personalized expression variation
☆20Dec 6, 2023Updated 2 years ago
Alternatives and similar repositories for personalized-expression-benchmark
Users that are interested in personalized-expression-benchmark are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆25Aug 20, 2024Updated last year
- For fine-tuning Enformer using paired WGS & gene expression data☆29Aug 27, 2025Updated 7 months ago
- PyTorch implementation of Basenji2.☆21Apr 29, 2025Updated 11 months ago
- ☆34Jan 27, 2025Updated last year
- Pytorch implementation of the Borzoi model from Calico, and Flashzoi, a 3x faster Borzoi enhancement.☆96Nov 13, 2025Updated 5 months ago
- Wordpress hosting with auto-scaling - Free Trial • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Code for improving the performance of sequence-to-expression models for making individual-specific gene expression predictions by fine-tu…☆16Mar 15, 2026Updated 3 weeks ago
- Decima is a Python library to train sequence models on single-cell RNA-seq data.☆65Mar 20, 2026Updated 3 weeks ago
- ☆19Oct 21, 2024Updated last year
- Valid and Powerful Machine-Learning-Assisted Genetic Association Studies☆22Jan 2, 2026Updated 3 months ago
- code to run EPInformer for gene expression prediction and gene-enhancer link prediction☆52Jan 19, 2026Updated 2 months ago
- ☆49Mar 22, 2026Updated 3 weeks ago
- ☆11Feb 6, 2023Updated 3 years ago
- Analyses related to the Borzoi paper.☆26Dec 14, 2025Updated 4 months ago
- A deep learning approach to predicting transcription initiation from sequence at single nucleotide resolution☆14Feb 24, 2026Updated last month
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- ☆14Jul 1, 2025Updated 9 months ago
- trans-species prediction of TFBS in plants☆14Apr 26, 2021Updated 4 years ago
- Machine learning methods for DNA sequence analysis.☆63Feb 27, 2026Updated last month
- ☆25Jan 9, 2026Updated 3 months ago
- Polygraph evaluates and compares groups of nucleic acid sequences based on their sequence and functional content for effective design of …☆40Mar 27, 2025Updated last year
- ☆19Feb 15, 2025Updated last year
- ☆16Dec 3, 2025Updated 4 months ago
- Elucidating the Utility of Genomic Elements with Neural Nets☆69Dec 2, 2024Updated last year
- gReLU is a python library to train, interpret, and apply deep learning models to DNA sequences.☆320Mar 26, 2026Updated 2 weeks ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- RNA-seq prediction with deep convolutional neural networks.☆235Aug 28, 2025Updated 7 months ago
- Repository for "NucleoBench: A Large-Scale Benchmark of Neural Nucleic Acid Design Algorithms"☆27Mar 13, 2026Updated last month
- https://www.biorxiv.org/content/10.1101/2023.07.03.547592v2☆32Jan 22, 2025Updated last year
- ☆33Feb 21, 2024Updated 2 years ago
- A python framework for inferring demography from tracts of identity by state as reported in PLoS Genetics by Harris and Nielsen (2013)☆15Aug 1, 2013Updated 12 years ago
- Deep learning models to predict enhancers in different Drosophila embryo tissues☆20Dec 10, 2023Updated 2 years ago
- KGWAS: novel genetics discovery enabled by massive functional genomics knowledge graph☆79Mar 7, 2025Updated last year
- Code and dataset for SNP2Vec paper☆21May 12, 2023Updated 2 years ago
- ☆27May 29, 2023Updated 2 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- deep learning-inspired explainable sequence model for transcription initiation☆103Mar 3, 2025Updated last year
- Toolkit to train base-resolution deep neural networks on functional genomics data and to interpret them☆179Mar 19, 2026Updated 3 weeks ago
- Build DeepSea training dataset from raw data☆31Jul 6, 2023Updated 2 years ago
- Foundation Models for Genomics & Transcriptomics☆848Feb 24, 2026Updated last month
- Sorted grep.☆13Mar 26, 2015Updated 11 years ago
- Sequential regulatory activity predictions with deep convolutional neural networks.☆467Jan 15, 2026Updated 2 months ago
- ☆14Nov 20, 2024Updated last year